G29304 (ccm2,LOC107684794)


Basic Information

Item Value
gene id G29304
gene name ccm2,LOC107684794
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58976662 ~ 58979697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39310
TTTTTATACTgcacataatatttaataaaacagtcaCAGTCTGTACAGATTACAGAACCATTCTTACATCCCTGTTGGATgatataataaagtatttgttCAAAAAGGCACAATGTCAGGCTTCCAAAAACCAACCAGAAGACGCAACAACAAATGAGTCCTTTCAATTTATAACCACAAAATCAACCATTTCTGCATTCTGGGAGAAGtcagttattttctgtattattgTAAGGCATTTTCTTTTAAGGGCtttcatgaataaaaaatataaaatcgaagtaaagcacattttagttgttttattgtaaaaaagaaataactgatttcttcttcttcaaaaaaaggaaaggctGATATGAGGTTATTCATTGGAAGGGATGAAATGATGAGATACGAGTGACCTGCAGATGAAAAGCAGTAAGATCTCCATCAACCAACAAACTGGCTTCGTCAGATTTCCAAATACTTCAGGTTTATAGCCAAAggcaagcaaacaaacaaacaaaccaaaaaagacGACGAAGCTACATACCCTACCGGCTGCAATtcacataaaacaataaatgggTAATCACAACCAGAAatagttgtttaaaaaaaaaagtgtttaaaaaaatgttatgcaataaaaataaaaattagcgTAACATACATTAAACAGTTAACATAAGGCTGGAAATAAAAGAACTTGGTAGATCAAATTTCAAGTTGGGCTAAAACAGGACAGAAAAACGACACTGACAGTCAAATCATTATGTTCCAAGACACAGGAAACCATTGATCCACATGAAGTCTAAATGAGACTTCCCACAGGGACTATGGGAAAGCTACTCGGTCAGACGTTTAGCTCTTCGATCCAGGCAGACgctgcttttttttgttagtttaaatGACCTGAAACCAGCACATTCACTTCCATCCTCAAAATACAGATCAACCCACAGCCCGGTTTACCACCCTAACGTATATACTGCTCATTTTTAGGGGCCAGACCACTGCTACTAAATGTAAGAACAAATACTGTGGCCCCATTTTAATGTAATCGATAACTTACCCTCGTCAAGATCAACTCGCTCTTGGATATGCATCATACCCATGTTACATAAGTGGCGGCTTACAGAACAACGGAAGGAGACAACGAGCAGTAGAATTTTCTATTGCAACACAGCCATGCTTCTGAGATTAGATCAGAGGgctaatacaataaaaacatttactgtaaagtTCAGGCATGATGTACTTTATATttgtgaataaatcattttaaattggtTTAAAGTAGTAGTGGCTGTGCACTATAGAAAGGGACGTTTGCACAACAAAATGCAGAAATCTTAAACTGTACTGTCATTCCCTTTGACTTCTTGGTGAAAAATAACTGAATGAATGATTCCTTCTCTAGATATCAaaacactgaatcatttctaataCTCATTACAGATTTTTTAGCTTTGCCTTTCCTCAGCATTTGTAGATTCACAGCTTCTAAAAATATTGCAAACACAGACCTTGTTTGCCAGTCCTGTAATGCTCcaatgcacattttagtgttttccttGTTACCAAAACATCTGCCTtaactagggatgcactgaatatctTGTAATAAAATTAACCAAAATTAGTAAAAGACTGAATAATCTATATCAAACAACaacttgtttgttttaagtcatttttctgtgttttctctaaCGAACAAACAGATGCCCACAGTCCAACCTCACCCTCTCCCCAGCAGCGACACAGAGTGCTGCTTTATACGAAGCAAGGAGTGAGGGACACATGGagcacacaaaaaagaaaaatgtaataaagcaTTCGGTATTACATATCACACTTAACATCAGTTTACTCTCTCTTTaaaaaactgtctgttttcagaTGAAAGACAAAGATACAAGCTGTGAAAGTGATAAAAGCTGAATTAACTAAGACTtggcatttgtttgtttaccaaaagactggCTGTATTTCAATTTACTCAGATGCACTAccgaggtaaatgtatgattagaacggcactgctgaagtacattcatgattaaaaattgcagtgctgaggtaaatatactGATTGTGTTTATTGGTATGTCTGCTGGGATATTAAAAAGCTTAAGCATATTAATATTCTAATGGTAGTTTTGTAACTGCcttttctttgaaaagcaagatAAAAATGCATGTAGGCAATTTAATTTATTCGATGGTGAAAAATGTTTGGTATTTGGCCAAACTACATTGAGCTCAGCTTTTAACAAAAATGGTAATTTCGGTGCATCTCTAGCCTCAACTTATAAGCTAAATATCAAGCCCTTAATAAAGTTACAAAAGTATGTTCACAGAATAATGCTCTGCACACAGCTAATTCAGgaagagtacacacacacagacacaaaaaaagagaaatgaaaagGCTGGTTTTAGAtcagtagataaaaaaaagcaacGTCCGATAACTGATAGCAGATACTGccaataaacacagaaaaagtTAACTGCGCCGTGCACAGTTACAGAGAGTCGCCTTGCATTTCAAGTGTCTCGAGGAGAACCATCATCCAATCTGAATGACAGCAATGTGGTCACACCCACGAGCCTAGGTGGCAAAGTATCCACATTCCAGCATTATTTGACTGATAGTGACATGGACCAGTAGACCATGTGACagtcagtatacagtatatatagatAAAGTGGTGACTTCTCCAGCCCTTAAAGTTTGTCAGGGTGACACCCCGTCCTGGTCCATACTGCACCCTAGTGCCTCAATGTCATTGCTGATGTCAGAGATCATGCGGTCCCACTCGTCACCCTCTGAgggtgatgttccttcatctGAGCCACCTGCTGCCCCATTGCCGTTAGTGGTGGAGTCTGAGGCGGAGCTGGCAGTGCGTCTGTAGCGCCCAAAGCTGTCGGTGATGATGCCACGGCCATCCTTCACGCCAATGGTTTCGAGGAAGTTCTCGAAGTGCTGGCTGTCCTTCTCTGGAATGAAGGGCCTGAG

Function

symbol description
ccm2 Acts upstream of or within several processes, including cell-cell junction assembly; circulatory system development; and heart contraction. Predicted to be located in cytoplasm. Is expressed in several structures, including cardinal system; heart; intermediate cell mass of mesoderm; liver; and ventricular zone. Human ortholog(s) of this gene implicated in cerebral cavernous malformation 2. Orthologous to human CCM2 (CCM2 scaffold protein).

NR:

description
PREDICTED: cerebral cavernous malformations 2 protein isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39310 True 3013 lncRNA 0.38 2 58976662 58979697

Neighbor

gene id symbol gene type direction distance location
LOC103022804 LOC108435018 coding upstream 12999 58954101 ~ 58963663 (+)
LOC103022293 eif5,if5,LOC103022293,LOC108435020,LOC107723356,LOC106610956 coding upstream 41871 58925376 ~ 58934791 (+)
LOC103037011 NA coding upstream 68656 58897337 ~ 58908006 (+)
LOC103021996 NA coding upstream 94471 58865600 ~ 58882191 (+)
LOC103021664 LOC108411900,LOC108257513,LOC107684818,LOC107746282,LOC107723542 coding upstream 156885 58804247 ~ 58819777 (+)
LOC103024478 tdh,LOC103024478,LOC108435012,LOC107723287,LOC107561940,LOC107589050,LOC107701506,LOC107746115 coding downstream 135742 59115439 ~ 59123577 (+)
pinx1 pinx1 coding downstream 159883 59139580 ~ 59168498 (+)
sox7 sox7,LOC107701473,LOC107561931,LOC107589052,LOC107684791 coding downstream 200948 59180645 ~ 59184033 (+)
trnal-cag_8 NA coding downstream 218505 59198202 ~ 59198284 (+)
LOC111194376 NA coding downstream 249147 59228844 ~ 59230388 (+)
G29299 enpp5 non-coding upstream 28082 58935011 ~ 58948580 (+)
LOC111191936 NA non-coding upstream 81322 58888723 ~ 58895340 (+)
G29290 NA non-coding upstream 88313 58888118 ~ 58888349 (+)
G29276 NA non-coding upstream 115835 58860500 ~ 58860827 (+)
G29267 NA non-coding upstream 126232 58849977 ~ 58850430 (+)
G29383 NA non-coding downstream 239879 59219576 ~ 59219829 (+)
G29388 NA non-coding downstream 256799 59236496 ~ 59243834 (+)
G29405 NA non-coding downstream 296910 59276607 ~ 59276837 (+)
G29409 NA non-coding downstream 332905 59312602 ~ 59312912 (+)
G29432 NA non-coding downstream 456463 59436160 ~ 59436375 (+)
G29155 foxq1 other upstream 557845 58417394 ~ 58418817 (+)
LOC103042006 NA other upstream 1164174 57802891 ~ 57812488 (+)
G28865 NA other upstream 1574270 57401925 ~ 57402392 (+)
dcaf4 dcaf4,LOC107602090,LOC107659175,LOC107562700 other upstream 2270570 56695844 ~ 56706092 (+)
sipa1l1 sipa1l1,LOC107721317,LOC107668228,LOC107756605,LOC107659170,LOC106932450,LOC102236503,LOC106960899,LOC103130950,LOC103457354,LOC107081118 other upstream 2522728 56337156 ~ 56453934 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other downstream 84776 59064473 ~ 59112315 (+)
G29382 NA other downstream 240835 59220532 ~ 59221036 (+)
LOC111194375 NA other downstream 241569 59221266 ~ 59228840 (+)
atraid atraid other downstream 574588 59554285 ~ 59559762 (+)
nme6 nme6 other downstream 607012 59586709 ~ 59598332 (+)

Expression


Co-expression Network