LOC111194375


Basic Information

Item Value
gene id LOC111194375
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59221266 ~ 59228840 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39412
CTGATGACAGAGAGACAACTGATGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGATGGAACAGCAGATGACACAGAGGCAGCTGATGATGGAACAGCAGAAGACACAGAGGCAGCTGAAG
>TU39414
CAGCTGATGAAGGAACAGCAGATGACACAGAGGCAGCTGATGATGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGATGGAACAGCAGATGACACAGAGGCAGCTGATGATGGAACAGCAGA
>XM_022678400.1
ATGCTCCTGAGGAACAAGCTACAGAACGATCTAACAAGTGCACTGTCCTCCATATCCAATGTATCTGCAAAATCAAAGAAGTCTAAAATTTCAGAACAAGTTGAAGGTGCTCCCGAGAAACAAGCTACAGAACGATCTACAAGTGCACTGTCCTCCATATCTAATGTCtctgcaaaatcaaagaaatctaAAGTTTCAGAACAAGTTGAAGATGCTCCAGAGGAACAAGCTACAGAAAGATCTACAAGTGCACTATCCTCTATATCTAATGTCtctgcaaaatcaaagaaatctaAAGTTTCAGAACAAGTTGAAGATGCTCCAGAGGAACAAGCTACAGAACGTTCTACAAGTGCACTATCCTCTATATCTAATGTGTCTGCAAAATCAAAGAAGTCTAAAATTTCAGAACAAGTTGAAGGTGCTCCCGAGAAACAAGCTACAGAACGATCTACAAGTGCACTGTCCTCCATATCCAATGTATCTGCAAAATCAAAGAAGTCGAAAGTATCAGAACAAGTTGAAGATGCTACCGAGGAACAAGCTACAGAACGTTCTACAAGTGCACTGTCCTCCATATCCAATGTATCTGCAAAATCAAAGAAGTCTAAAGTTTCAGAACAAGTTGAAGATGTTCCCGAGGAACAAGCTACAGAACGATCTACAAGTGCACTGTCTTCTGTATCTAATGTCtctgcaaaatcaaagaaatctaAAGTATCAGAACAAGTTGAAGATGTTCCAGAGGAACAAGCTACAGAAGATCTACAAaaatctaAAGTATCAGAACTAGTTGAAGATGCTCCTGAGGAACAAGCTACAGAACGTTCTACAAGTGCACTATCCTCTATATCTAATGTGTCTGCAAAATCAAAGAAGTCTAAAATTTCAGAACAAGTTGAAGGTGCTCCCGAGAAACAAGCTACAGAACGATCTACAAGTGCACTGTCCTCCATATCTAATGTCTCTGCAAAATCAAAGAAGTCTAAAGTATCAGAACAAGTTGAAGATGCTACCGAGGAACAAGCTACAGAACGTTCTACAAGTGCACTGTCCTCCATATCCAATGTATCTGCAAAATCAAAGAAGTCTAAAGTTTCAGAACAAGTTGAAGATGTTCCCGAGGAACAAGCTACAGAACGATCTACAAGTGCACTGTCTTCTGTATCTAATGTCtctgcaaaatcaaagaaatctaAAGTATCAGAACAAGTTGAAGATGTTCCAGAGGAACAAGCTACAGAAAGATCTACAAGTGCACTGTCCTCTATATCTAATGTCtctgcaaaatcaaagaaatctaAAGTATCAGAACTAGTTGAAGATGTTCCAGAGGAACAAGCTACAGAAAGATCTACAAGTGCACTGTCCTCCATATCCAATGTATCTGCAAAATCAAAGAAGTCTAAAGTTTCAGAACAAGTTGAAGATGTTCCCGAGGAACAAGCTACAGAACGATCTACAAGTGCACTGTCTTCTGTATCTAACGTCTCTGCAATATCAAAGAAATCTAAAGTATCAGAACATGTTGAAGATGCTCCAGAGGAACAAGCTACAGAACGATCAACAAGTGCACTGTCCTCCATATCCAATGTCtctgcaaaatcaaagaaatctaAAGTATCAGAACAAGTTAAAGATGCTCCTGAGGAACAAGCTACAGAAAGATCTACAAGTGCACTGTCCTCCAAGTCCAATGTTTCAACAAGATCTAATctaatttcagatttttcaggGTTTGAAACTAGTGACACTGCAGAGGTAGGCCATGACACAGAAGACCAAGCTCCAAGACCAACCTCAGCCAAATCTAACACTATAAAATCTGCCTCTATAAAAACTGGAAAATCAAATAATGGGGGAAATGCAGTCAAATCTTGTGTTATAGAATCATCTGAAAAATACAGAGTTATAGAAGCATCACCTGACATGCTGGCAGAGGAAAATGAAGAATCCGGAGAGAGAGCAGCAAGTGTTGTATCTGCAAAGTCCAATATCTCTGTGAAATCTAAGAAGTCAACAGGCCAAATCGGTGAAAGATCACAAAGTGCACTGTCAGTAAAAAACAATGCTTCTGAAAGATCTACACAATCAAAACCATCAAAGGCTCCTGGGCAGCATGTTGACCATGGGGTTAAGGGGGAAAGGGCACCAAGTTGCATGTCTTGTAAATCTAACAAATCAAAAGTTTCAGACACAGTGGTGAATGAGCCTGTAGAAATAGATAACAACACAGAGGAGAGAGCACCAAGCACAGCATCAGCTAAATcctgtaaaaaatgtttagagGAAAAAGCTGAGAGATCGCAAAGTGCTCTATCTGCTAAATCTAACACTTCAGTCACATCAAGGAAGTCAAAATTCTCTGATGTGCAGTCTGGACAAGTGGAAGAAAGACCTCCAAGTACTCTTTCTATTAAATCTGGTAtatctgaaaatgaaaaaattaacCCTGTAATAGTTGACCCTGCTGAATCTGCAGAGACGATAAGGTCTACTGCTTTGGCTGATTGTAAAGATTGTACCAAAAGATCTTCTAGTGCTCTGTCAACTGGATCTGTAAAATCTAAGACATCACAAACTTTACAGAAAGAGTGCAGTAATGAAAGGAACCCTAGTGTGTTGTCAGTCCAATCAAACACTTCTGAAAAACGGAACATTTCAGAAGTGGAAAGATCAATAAGTCCTGTGTCGGCCAAATCTAATTCTTCTGCAAAATCTAAAGAATCTACCAGGTCTGCAGTTCAGAATAAGTCAAATGTCTCATCTAAagttgaaaaagagaaggaaaacaaTAGTATCTCACAGAACAACACAGAAATCAGTGATACAAGAGTGAAAAGTTCTTTTTCAGACCATTCAAATGCACAAAGCCCAGCTAAATGCATATGTGGGGGCTTGATGAAATCAAATGTatcagaaaatacatttaataatgaggAGAGGTCTCCCAGTGTCTTGTCAAAAAAATCTGATGTATCTGCAAAGTCTAAAGCCAGTTCGGAAAGAGAACCAGCAAGTCCTTCTGTTTCCATTGGGATCGTAGAGGATTATGATGCTGATAATATTGAAGAGGAGACTAGCATGTCTGTGACAACCACTCCTGTTCCATGcatgaaatccaaaaatgaaCACATGCAAACACCATGTGACACACCTAAACGTTCACTGTCAGCAAGAACCAATGCCTCAAATAAATCCAAGAAGTCTGAAAGTGCTCGTAGCAACACTGCCGAGCCGGCGTCAGATACTGTATGTGGGATGGAGAGCAATGAATCTGTGACAGAAAGCACTAAGGAAAATGAATCTTCAAACAAAGAAGTTCGGTCATCTAGTAAAGCCTCCAGTGTTTCCCAGTCTAAAGAGAAAAAGCCTGACAGACCAAAAAGTAATATGTCCAGTGCATCCCCTTTTCTGGAAGTAAAAGTCCAAAAGAGTCATTCTAAAAGTGACCTTACAAATGCACAATCAAAAAATGCACATAATACAGGGAACACACCCACTAAAGGAGATGAAAAAGACACATCAAGACCTCCGTCAGAGAAATGCCTCAGTCCTGGCCCATCAAAATccctaaataaatctaaaaagcCTGCTATTGTCCTAGGGGGCTCTAATGATAGTGTAGTGTCTCAAGTGGTTTCAGCTCCAGAACAACAGAATGAAAATTCAAAGTATTTGAATACTACAGGAGACATGTCTGAGAGGACAAATGCATCCGAAAGAACTTGTAGTGGACCTCCAGATGCTATTGATTATGGCAGACCTGCCAGTGACAAAACAAGTGAAAAAAGCAGTAAATGCAGAAACAGAAAAGGAAGCAGCTCTTCACAACAGAAGGTAGATGATGAGATCTCTGATTTAGTTCCATCAAGTTTACCGAATGCATCTCCAACTGAGGTAGTGAATGAATGGTTGAATAAAATTCCTCTGGACAGCACTTTATATGACATTGGGGATGAAttccatgaaaactgtgaagaaTTAGAAACTCCGAACACAACAAGAGAGCCGACACCAAATGCAAGAGGGCATGAAGCTGAAGGAGATGTTGCTGGTGTGTTTGAGCCTCAAATTGAGAAGGAAGAAATTGACAATAGCAAGGACAAAGAAGGTAACGttgaaaaaaatactaaaaaagacCTTGCTGATGCTGGAAACAAACAGTGTAGTTTGGAAAAAGATGATGTCCCAAAAACTTTCCATACTTCTGTCCAAGTCATGAGAGTTTTGCTGAGTCCCAAACTTGATAGGTGCAATAGTTTACCAGAGGTATCTTCTGTATATGGACAAAAACTCAGCACCTCAGCAAGAGGACTCTTGGACTGTCTTGTAAATCTTCAGTTGATTGATTTTGATCCCAATGATGTAAACGGAAAAGCTGAAAAATACAAGGACCTCATGAACTTACTTCAGTCCCTTTGGCTTAGTGACCCTTCTGAGAGGAGGACAGTTACACATAAAAGTGAATCCAAAGATCAGCAATCTGTGTACGATGAATTGAAAGCCAAATCATCCTCAGGGGTCGATGTAAACAGTGGATCATCTGGCTCTGGAAAGAGCAGTGCTAACGATAGTACCAAAACTCATAAATCACAAACCAATGCCGAAGGTGAGGGCTTTGAAACACTGACCAAAGTACAGGAGGTTGATGAAACAGAAGGAGAGGTTTTAGAAGTGGCAGACACAAAATCCAATCCAGCAACTCCAGATATTGCAAGTCGAGTCCAGTGGACCTCTGAGAATGAGGCAGAGGGTACTGttgaagaaaaattaaaagatagtAACGTTCCAAACTCAGACGATACAATTAGGAGTAATGATAGTCCCAGAGATCAACTCGAAACACCATCTTCATCCAACAAGAGTTCCGGAAATGATAGTACTGCTAAACAGAATGAAGCTGAAACTGAACATCAGGAAGACACAAGTTCAGGTACTCCTCCTTCTGTGCAGAGAGCCCAATTAACAAAAAAGGCTTCTCAAGACCCTGATCCTGTCTGGGTGCTGAATCTGctaaataaactagaaaagCAGTTTATGACACATTATGTcaatgcaatgtctgaatttaAAGTCCGCTGGAACTTAGATAACAATGAGCAGCTTGATGTCATGATATGTGAATTAAGAGATGAAGTTCATAAGAGGATACAATTTAGCATAGACAGAGAACTCCGGAAAATTCAGGGTCGTGCAGGAAGACCAAGACCCCCAAAAGAAGCCATGTCACGCGAGTCAACTGTTCAAACTGAACAAAGACGCAGACGTCTGAAAGGAATGGTCAATCAGTCAATCGATCAAGCAGCAAAAAGTGATGATGATTACACAGGTACAGGGACTGATTTTAGTGATCAGCGCAGCGATGATGAATATTGCCCATGTGACACATGCATGAAAAAGAAAATGGCATCTAGGCCTGTGTTACCTGTGGAGGTCTTTAATTCTGCTCCAGTTATGATGGACTTTGACTTGAGAAAAATTCTCAATCTTAAAAGAGAAGCTCCCACCCATAACAAAGAAAGAATCTTAGAGGAGACTGAGAATGTGGAGTTTAACACAGACGCTAAAGGTTTGGATGAAGATGTTGTGCTTGAGGTTGtgaaggaagaggaggaggaggagctcgAAAAAGCACAGGTAACTGAATGTGAAACAGAAATGGCGAGGTGTGAGGCAGAAATGTGCATTGAAAATATGACTGATGAGCAAGAACATGCAAGAGATATGGATACTGCTGATGATGAAACACCAGAGCAGGGTGAGACAGCTGAAACAGAAAATGTAGAGGCAGCCAAAGCTGATACAATAGCAGAAGAGGAAATCACTGAGGGGTTACCAGCAGATGAGGAAACAGTGGAGGCCACTGTGGCTGAAGTGGCAGAGGATGAGGAAAAAGTTGATGATGAATTAGCAGAGGGAAAAGGGTCTGTGGAaagcaaaacagagagagaagagcaaaCTCCACAAGCGGAATCTCTAAAAGATGGAGCTGAGGAAGAAGAGGATGAAATGGCAAAAGATGAAGAGGCCAATAATGATGTAATTACAGAAGACAGAGAAACAACAGAAGGTCTAGAAGAGGAAGAAATAGTAGAGACAGCAGAAGATATGGAGACAAGTACAGCTGAAGGTGCAGAAGATGAAGAAAAAGTTGATGATGAATCAGCAGAAGGAAAAGATGAGGATGAGGATAGAGAGACAGCTGATGAAGAAACAGCAGAAGATGGAGAGACAGCTGATGATGGAACAGCAGAAGATGGAGAGACAAATGATGACGAAACAGCAGAAGATGAAGAAGTAGCTGATGAAACAGCACAAGATGGAGAGACAGCTGATGATGGAACAGCAGATGACACAGAGGCAGCTGAAGATGAAACAGCAGAAGATGGAGAGACAGCTGATGATGGAACAGCAGAAGATGGAGAGGCCACTGAAGGTGGAACAGCTGATGACAGAGAGACAACTGATGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGAACAGCAGAAGACACAAGAGGCAGCTGAAGAAGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGAACAGCAGAAGACACAAGAGGCAGCTGAAGATGAAACAGCAGAAGACACAAGAGGCAGCTGAAGATGAAACTGCAGAGGATGGAGAAACAGCTGAAGATGGAACAGCAGAAGATGGAGAGACAGCTGATGAAGGAACAGCAGATGACACAGAGGCAGCTGATGATGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGAAGGAACAGCAGAAGACACAGAGGCAGCTGAAGATGAAACAGCAGAAGATGAGAGACAGCTGAAGATGGAACAGCAGATGACACAGAGGCAGCTGATGATGGAACAGCAGAAGATGGAGAGACAGCTGACAATGGAACAGCAGAAGATGTTGAGGCAGCTGAAGATGGAGAGACAGCTGAAGATGGAACAGCAGATGACACAGAGGCAGCTGATGATGGAACAGCAGAAGACACAGAGGCAGCTGAAGATGAAACAGCAGAGGATGGAGAGACAGCTGATGATGGAACAGCAGATGACACAGAGGCAGCTGATGAAGAAACAGCAGAAGATGGAGAGACAGCTGATGATGCAACAGCAGAGGATGGAGAAACAGCTGATGAAGGAATAG

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0052652 cyclic purine nucleotide metabolic process biological_process
GO:0046068 cGMP metabolic process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0009187 cyclic nucleotide metabolic process biological_process
GO:0009190 cyclic nucleotide biosynthetic process biological_process

KEGG:

id description
ko00230 Purine metabolism
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU39412 False 219 TUCP 0.48 3 59228068 59228699
TU39414 False 220 TUCP 0.41 2 59228311 59228562
XM_022678400.1 True 7221 mRNA 0.41 2 59221266 59228840

Neighbor

gene id symbol gene type direction distance location
trnal-cag_8 NA coding upstream 22982 59198202 ~ 59198284 (+)
sox7 sox7,LOC107701473,LOC107561931,LOC107589052,LOC107684791 coding upstream 37233 59180645 ~ 59184033 (+)
pinx1 pinx1 coding upstream 52768 59139580 ~ 59168498 (+)
LOC103024478 tdh,LOC103024478,LOC108435012,LOC107723287,LOC107561940,LOC107589050,LOC107701506,LOC107746115 coding upstream 97689 59115439 ~ 59123577 (+)
LOC103022804 LOC108435018 coding upstream 257603 58954101 ~ 58963663 (+)
LOC111194376 NA coding downstream 4 59228844 ~ 59230388 (+)
LOC111194377 NA coding downstream 11156 59239996 ~ 59243400 (+)
LOC103025639 blk,LOC108435007,LOC108258139,LOC107589086,LOC107684815,LOC107746144,LOC107701472,LOC107561930 coding downstream 23133 59251973 ~ 59275534 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding downstream 68841 59297681 ~ 59353125 (+)
LOC103030186 LOC108435004 coding downstream 259321 59488161 ~ 59503522 (+)
G29383 NA non-coding upstream 1437 59219576 ~ 59219829 (+)
G29304 ccm2,LOC107684794 non-coding upstream 241569 58976662 ~ 58979697 (+)
G29299 enpp5 non-coding upstream 272686 58935011 ~ 58948580 (+)
LOC111191936 NA non-coding upstream 325926 58888723 ~ 58895340 (+)
G29290 NA non-coding upstream 332917 58888118 ~ 58888349 (+)
G29388 NA non-coding downstream 7656 59236496 ~ 59243834 (+)
G29405 NA non-coding downstream 47767 59276607 ~ 59276837 (+)
G29409 NA non-coding downstream 83762 59312602 ~ 59312912 (+)
G29432 NA non-coding downstream 207320 59436160 ~ 59436375 (+)
G29448 NA non-coding downstream 278168 59507008 ~ 59519972 (+)
G29382 NA other upstream 230 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 108951 59064473 ~ 59112315 (+)
G29155 foxq1 other upstream 802449 58417394 ~ 58418817 (+)
LOC103042006 NA other upstream 1408778 57802891 ~ 57812488 (+)
G28865 NA other upstream 1818874 57401925 ~ 57402392 (+)
atraid atraid other downstream 325445 59554285 ~ 59559762 (+)
nme6 nme6 other downstream 357869 59586709 ~ 59598332 (+)
c3h14orf2 NA other downstream 1291502 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 2697240 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 3592903 62821743 ~ 62853288 (+)

Expression


Co-expression Network