G29492


Basic Information

Item Value
gene id G29492
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59554331 ~ 59559664 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39564
CAATACTTAAAGGTAGTTGCTTACCACACTGCATACATGATTATTAgtcttttaatgcatttttactttttaaatctttaCTATGTCTACTATATAACCAACAGTCTGATGCTAAATTTGAGATAGTACTTAAACACTGGTCATCAAATGACTCTCCCTGAACTGTAAACATATTATAgtttatacatgtttatttatacacattatatattatatatgtacattttagaaaacaagtacaataTAAGTGTATGCATGtgcaaacaaataataattgaaCAAATAATTGTGtgcaaaactaaatatatatagatatgtgCAGTCAAACCCCTGGCCAATACTGCAGAGGCTACACTGATTTAGAGTTCAGTATAAACCCACAATCAGATTATAGCTTCTTTTCAGTGTAGATTAATCAACATACAGCTTTGAAAGGCCAAGTAAATTGTCAGTTGTAACATTTATTTCTGGGacggcttaaaaaaaaatactattgcACTTCCCAGCATAATTCATtgctcagtaaaaaaaaactgctttttattttaaaaaaatcttcagaAGTACtgtttcaaataataataaaaaataaataaaataaaaaaagtatgtttaaaatggtAAACTTGTCATTCAATGCAGTCAGTTTTCTGTCAGTTTGTGTTTTGTACAGTGTTCTCTACCATCGTTTTGACAGTCAAGAAGCCAGAATTCAGATGCCTTTGGCTTTTCTTCTTTGGGTTACCCATAATAATGCCGAAATGACAACTGTGGATCCACCCAATATTGCCATGACCTCCATCATGGGAAACTGGCCCTCTCTCAGGCATTTATACCCATGAAAGTTCTGAGCACAGGTACACTCAAAGAATCCTGGTCCGTAAGGCATGCAGAGAGAGTTCTCAGGACAGTCCCAAGACATTCCTGTCTGATTGCAGGCATTCTTCTGTCCTTCACAGAGCCGAGTATTCCCTTTAACCTCCACTTTATCCCATGATGTGTTGCCTCCTGGACACTCCAGCTTTATGGGCATTATAAGATGACCCAACTGATTAAATCCCTGAAATACAAAATCACTCAGATTGGAAAGAGGGTTGTTGGAAAGAtcgATTATAAATGCTGCTGATGCCTCACTGAGGTCATCCAAACGACTCAGAGAACAGTTTGAGAAATCCAACCCGAAAATGCTGTcctcatcatcaccattatcatcagcgctgctgctgctgctgctgttcctaaTGCAGCATCGCCCTTCTATTCGGCCTGCTGAGAGGCACGCGCTCCACACAGCACTGCCGCTCTGCACCACTCCATCACACAACCGACAAAactgcagaaaaacacacacagtcagaacaGCAGCTTCTACTGCAGTCCAGAGCTCCACATATTTACTCCACACATAGAAACTGCTCCATCAGAACAGCACAGCTCCACTGCACAACGCTGTGACACTCACTGCTCTCTATTTACACA
>TU39566
CAATACTTAAAGGTAGTTGCTTACCACACTGCATACATGATTATTAgtcttttaatgcatttttactttttaaatctttaCTATGTCTACTATATAACCAACAGTCTGATGCTAAATTTGAGATAGTACTTAAACACTGGTCATCAAATGACTCTCCCTGAACTGTAAACATATTATAgtttatacatgtttatttatacacattatatattatatatgtacattttagaaaacaagtacaataTAAGTGTATGCATGtgcaaacaaataataattgaaCAAATAATTGTGtgcaaaactaaatatatatagatatgtgCAGTCAAACCCCTGGCCAATACTGCAGAGGCTACACTGATTTAGAGTTCAGTATAAACCCACAATCAGATTATAGCTTCTTTTCAGTGTAGATTAATCAACATACAGCTTTGAAAGGCCAAGTAAATTGTCAGTTGTAACATTTATTTCTGGGacggcttaaaaaaaaatactattgcACTTCCCAGCATAATTCATtgctcagtaaaaaaaaactgctttttattttaaaaaaatcttcagaAGTACtgtttcaaataataataaaaaataaataaaataaaaaaagtatgtttaaaatggtAAACTTGTCATTCAATGCAGTCAGTTTTCTGTCAGTTTGTGTTTTGTACAGTGTTCTCTACCATCGTTTTGACAGTCAAGAAGCCAGAATTCAGATGCCTTTGGCTTTTCTTCTTTGGGTTACCCATAATAATGCCGAAATGACAACTGTGGATCCACCCAATATTGCCATGACCTCCATCATGGGAAACTGGCCCTCTCTCAGGCATTTATACCCATGAAAGTTCTGAGCACAGGTACACTCAAAGAATCCTGGTCCGTAAGGCATGCAGAGAGAGTTCTCAGGACAGTCCCAAGACATTCCTGTCTGATTGCAGGCATTCTTCTGTCCTTCACAGAGCCGAGTATTCCCTTTAACCTCCACTTTATCCCATGATGTGTTGCCTCCTGGACACTCCAGCTTTATGGGCATTATAAGATGACCCAACTGATTAAATCCCTGAAATACAAAATCACTCAGATTGGAAAGAGGGTTGTTGGAAAGAtcgATTATAAATGCTGCTGATGCCTCACTGAGGTCATCCAAACGACTCAGAGAACAGTTTGAGAAATCCAACCCGAAAATGCTGTcctcatcatcaccattatcatcagcgctgctgctgctgctgctgttcctaaTGCAGCATCGCCCTTCTATTCGGCCTGCTGAGAGGCACGCGCTCCACACAGCACTGCCGCTCTGCACCACTCCATCACACAACCGACAAAaCTGCGGCTCGCTCTGCTGAGAATAGACGTAGACACCggagagaatgagaaatatataaaataaataaacagcggACAGAGTAGAAGCGCTGACCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39564 True 1479 lncRNA 0.39 6 59554504 59559664
TU39566 False 1430 lncRNA 0.42 7 59554331 59559664

Neighbor

gene id symbol gene type direction distance location
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding downstream 67588 59445511 ~ 59486743 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding downstream 120018 59358827 ~ 59434313 (-)
ccm2 ccm2 coding downstream 557569 58976662 ~ 58996762 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding downstream 601446 58947653 ~ 58952885 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding downstream 612134 58934892 ~ 58942197 (-)
eif2b4 eif2b4 coding upstream 3165 59562829 ~ 59573611 (-)
LOC103030505 LOC103030505,LOC108434978 coding upstream 39756 59599420 ~ 59608991 (-)
LOC107197813 NA coding upstream 140370 59700034 ~ 59704083 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding upstream 232912 59792576 ~ 59830891 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding upstream 322476 59882140 ~ 60059600 (-)
G29480 NA non-coding downstream 111329 59442779 ~ 59443002 (-)
G29417 NA non-coding downstream 228619 59324993 ~ 59325712 (-)
G29393 NA non-coding downstream 310496 59236497 ~ 59243835 (-)
G29370 NA non-coding downstream 420659 59133411 ~ 59133672 (-)
G29369 NA non-coding downstream 422194 59131541 ~ 59132137 (-)
G29494 NA non-coding upstream 14664 59574328 ~ 59574536 (-)
LOC111190079 NA non-coding upstream 16574 59576238 ~ 59578395 (-)
G29509 NA non-coding upstream 47511 59607175 ~ 59607846 (-)
G29559 NA non-coding upstream 292391 59852055 ~ 59852468 (-)
G29563 NA non-coding upstream 298402 59858066 ~ 59858339 (-)
snx17 snx17 other downstream 1421 59506926 ~ 59552910 (-)
G29478 NA other downstream 116033 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 468445 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 619542 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1379627 58159207 ~ 58174704 (-)
LOC103034188 LOC108434976 other upstream 589733 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 791608 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 809382 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1733212 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 2272177 61831841 ~ 61890729 (-)

Expression


Co-expression Network