G29509


Basic Information

Item Value
gene id G29509
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59607175 ~ 59607846 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39584
aatactttataaataaaaaatgatcagaataaatcaatgctcacttttatttgcatgtagcaaaataaaaacatgacatccctgtcaaacataaacctatagcctatatacatattaccaatataaataactttacattacaacagaggcagagcttcttattcttttgtaaacatatttaacagatcaaaacaaaagtgcttcaaccagaatAGGGAATAGAAAAAGCCTTCATATGTATAaagggaacatgatatccctgtcaaataaacaaacctatataaactataaataacttagatacaacataaactacaagtgttttagccagaataaggaagatattgtgtgtagtgaatcTGCTTGAGGTGGAGGAACGGATGTATTACTGTTgctggtcggctccactctccagAACAATTTGGAGCAAGCTGAAGTCTGAAGTTTATCAAACCTTTGAAAGTcgaaccactgaattagacctgcctCCCTCAACTATCCGCTCattcttcatttaaaatgtcctgCGATGAAAACGAGcgggttagggtcggtttcgtttcatcgcgggaggttttaggtgcggagcggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39584 True 593 lncRNA 0.36 2 59607175 59607846

Neighbor

gene id symbol gene type direction distance location
eif2b4 eif2b4 coding downstream 33564 59562829 ~ 59573611 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding downstream 120432 59445511 ~ 59486743 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding downstream 172862 59358827 ~ 59434313 (-)
ccm2 ccm2 coding downstream 610413 58976662 ~ 58996762 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding downstream 654290 58947653 ~ 58952885 (-)
LOC107197813 NA coding upstream 92188 59700034 ~ 59704083 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding upstream 184730 59792576 ~ 59830891 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding upstream 274294 59882140 ~ 60059600 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding upstream 489642 60097488 ~ 60123478 (-)
LOC103033561 NA coding upstream 520201 60128047 ~ 60145920 (-)
LOC111190079 NA non-coding downstream 28780 59576238 ~ 59578395 (-)
G29494 NA non-coding downstream 32639 59574328 ~ 59574536 (-)
G29492 NA non-coding downstream 47511 59554331 ~ 59559664 (-)
G29480 NA non-coding downstream 164173 59442779 ~ 59443002 (-)
G29417 NA non-coding downstream 281463 59324993 ~ 59325712 (-)
G29559 NA non-coding upstream 244209 59852055 ~ 59852468 (-)
G29563 NA non-coding upstream 250220 59858066 ~ 59858339 (-)
G29608 NA non-coding upstream 466226 60074072 ~ 60091759 (-)
G29681 NA non-coding upstream 776157 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 780134 60387980 ~ 60388361 (-)
snx17 snx17 other downstream 54265 59506926 ~ 59552910 (-)
G29478 NA other downstream 168877 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 521289 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 672386 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1432471 58159207 ~ 58174704 (-)
LOC103034188 LOC108434976 other upstream 541551 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 743426 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 761200 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1685030 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 2223995 61831841 ~ 61890729 (-)

Expression


Co-expression Network