G29526


Basic Information

Item Value
gene id G29526
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59700063 ~ 59704110 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39604
CCGGATTCACTTCAGCGTGACCAACCAGCATAACCAATACATATAAACTGGCCTACTATTGAACCGGGTACaggaagggaaagaaagaggatATAATCTCAGTATAATAATGAGTTTgtgcagtttttaaacacatttcaaccccacacttataagtttgttgtttattggaattaaaatcctctgtcagaatttgtgtttttttttaagtcagacACACCCAATACATCCAAATGTCGTTTCATTATTCCCACTTTTCTGGGCTAACAGAGATCCTCCCCCGCGGCGGTACAGACACTGCTCTCGAATGTCTTTtctATTCTTGACATCCGCCAGTTTTGCACAGTCAATCAATTCTTCCTCACCTTTCTTCTTACACACCAAGCAGTCGATCCAGGGCGTGTTAGGCTTCCGTTGAGCACATTCGTCTCTATGACGTTTAGTACGGTCCTTTTTGCATTCAGTGACCATCAGACGAACATGTACTTGCCAGTCTGTGGGTGTAATGGTCGGTGAGGTCCGAAGAGATTCATACCCAATATGAAAAGGACCTCCCAATTTTTTATTGGCTTCATCCAGAGCCTTGTCAATGTGTGTTCTGTATTCTTCAGGCAAATCTGCGTAGTTGTTCCATTGTTGAGTAGAACCCTGCAGAACCACCACAGAacccaacagcagcagcttcagcacaaCACTCATCCTGCAGCTCCTCTTCTACCAAATGAAttcaaaaccacacacacacacccatatatacacacacggcTCTATCC

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU39604 True 773 lncRNA 0.41 4 59700063 59704110

Neighbor

gene id symbol gene type direction distance location
LOC103030186 LOC108435004 coding upstream 196541 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 346938 59297681 ~ 59353125 (+)
LOC103025639 blk,LOC108435007,LOC108258139,LOC107589086,LOC107684815,LOC107746144,LOC107701472,LOC107561930 coding upstream 424529 59251973 ~ 59275534 (+)
LOC111194377 NA coding upstream 456663 59239996 ~ 59243400 (+)
LOC111194376 NA coding upstream 469675 59228844 ~ 59230388 (+)
LOC103031439 LOC108434977 coding downstream 49366 59753476 ~ 59765073 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding downstream 63272 59767382 ~ 59786661 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding downstream 356988 60061098 ~ 60091808 (+)
LOC103035162 LOC108434989,LOC108258176 coding downstream 561727 60265837 ~ 60273289 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 575729 60279839 ~ 60281890 (+)
G29516 NA non-coding upstream 67595 59632119 ~ 59632468 (+)
G29515 NA non-coding upstream 68156 59631704 ~ 59631907 (+)
G29448 NA non-coding upstream 180091 59507008 ~ 59519972 (+)
G29432 NA non-coding upstream 263688 59436160 ~ 59436375 (+)
G29409 NA non-coding upstream 387151 59312602 ~ 59312912 (+)
G29558 NA non-coding downstream 147961 59852071 ~ 59852524 (+)
G29560 NA non-coding downstream 153131 59857241 ~ 59857582 (+)
G29567 NA non-coding downstream 183746 59887856 ~ 59985113 (+)
G29580 NA non-coding downstream 392045 60096155 ~ 60097909 (+)
G29591 LOC108434993 non-coding downstream 423951 60128061 ~ 60131474 (+)
nme6 nme6 other upstream 101731 59586709 ~ 59598332 (+)
atraid atraid other upstream 140301 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 471223 59221266 ~ 59228840 (+)
G29382 NA other upstream 479027 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 587748 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 816232 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 2221970 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 3117633 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 3221908 62926018 ~ 62931133 (+)
G30362 NA other downstream 3631624 63335734 ~ 63345693 (+)

Expression


Co-expression Network