G29560


Basic Information

Item Value
gene id G29560
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59857241 ~ 59857582 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39643
taaaaataatataataatacttatacgtatgtacctgttttttttaaaccaaccaaaatatgttttatatacactCTATGAGGCTCctgctcatcctaaatcactcAGTtgagtttaggtcaggggattgtgaaggccatgcacctttttgtttactagacaattccatatgcgtcaattaatCGTTTTCATGGTTTTCATATTAATcgccaatgtaaaaaaataaaaaataaaataattaaatgagacgtgtccaacttttgactggtactatatatttGCGAgttgacacaccccagagtttgcccagatgaacggccaccaatgttggttagaagcacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39643 True 342 lncRNA 0.42 1 59857241 59857582

Neighbor

gene id symbol gene type direction distance location
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 70580 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 92168 59753476 ~ 59765073 (+)
LOC103030186 LOC108435004 coding upstream 353719 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 504116 59297681 ~ 59353125 (+)
LOC103025639 blk,LOC108435007,LOC108258139,LOC107589086,LOC107684815,LOC107746144,LOC107701472,LOC107561930 coding upstream 581707 59251973 ~ 59275534 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding downstream 203516 60061098 ~ 60091808 (+)
LOC103035162 LOC108434989,LOC108258176 coding downstream 408255 60265837 ~ 60273289 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 422257 60279839 ~ 60281890 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 537996 60395578 ~ 60462048 (+)
LOC111190190 NA coding downstream 573279 60430861 ~ 60443507 (+)
G29558 NA non-coding upstream 4717 59852071 ~ 59852524 (+)
G29526 NA non-coding upstream 153131 59700063 ~ 59704110 (+)
G29516 NA non-coding upstream 224773 59632119 ~ 59632468 (+)
G29515 NA non-coding upstream 225334 59631704 ~ 59631907 (+)
G29448 NA non-coding upstream 337269 59507008 ~ 59519972 (+)
G29567 NA non-coding downstream 30274 59887856 ~ 59985113 (+)
G29580 NA non-coding downstream 238573 60096155 ~ 60097909 (+)
G29591 LOC108434993 non-coding downstream 270479 60128061 ~ 60131474 (+)
G29594 LOC108434976 non-coding downstream 299688 60157270 ~ 60162157 (+)
G29596 hif1a,LOC107589062,LOC107743977,LOC107563689 non-coding downstream 307884 60165466 ~ 60177344 (+)
nme6 nme6 other upstream 258909 59586709 ~ 59598332 (+)
atraid atraid other upstream 297479 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 628401 59221266 ~ 59228840 (+)
G29382 NA other upstream 636205 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 744926 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 662760 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 2068498 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2964161 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 3068436 62926018 ~ 62931133 (+)
G30362 NA other downstream 3478152 63335734 ~ 63345693 (+)

Expression


Co-expression Network