G29580


Basic Information

Item Value
gene id G29580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60096155 ~ 60097909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39665
ctgtctttttaaaataattagattTATTCTATTCATCAAACcctttcttttgattttttttctaacataAACTTAGTTGGGCCAtcataaaacacacaatatgcatgaaagaggaggagggagggTAGAGAggtcaaaagagagagagagagagagagagagaaaatgagagagagagtgagagtgtgtgtgtgagagagatatcAAGCCaaacaaatgaagaaaaaataaaatacatcttCCTCATGTGTAAAATCCACACCCATGACTTGGAtttgaaataaaacagaataaaacaaaaaacaagagtCCTGTGAACACAACAAATGATCTAACTCGAAGTGCTTTAGTCCCAACCCACCACTGCAGctggtatttatttttattgaggaATAAGACTTACTGGATCCGCATTTTTATTCCCAAATGGGCCTTAAAATTACCCCACAAACGCCGGCTGTCATTCCGAACACTCCTGTAAAAGTCATCTAAGCTCTAGTCAATCGTTTCAAGGGCATCCGACTGTCCTGCCCTTCAAAACGGACCGAAGATAAGAGCAGTAGACAGTAGAGCTGCTCATGGCTAAAATGTCCAGAGTAAGAGGTTAAAAGAAggttaaaaaacacactgaagaaGTTCTGAACACTGCGCCACGAGAAAAGAAGAACAGTTCTTGACCGTCTAAAGTCATACTGAAAATGAAGCTAGGCTGAAGTTTCCAAGAGGTCTCCAGAGAAACACAGCACACAGCTGCTCACAAAAAAAGCAGGCTTTCATGACCTGTTTCAcacgtttaaaaaaatacttcaggGAGATAAAGGTTATGGCAACCTCTGTAGCCTACTGCTGCCCGTTGAAATTATGAAGCGATTCCTGTTTGACGGTACCAGTGCCAGACTGGCACCTGCCCTGTACAACAATAGAACTGGGATAATCACATTCCTGACATTCTTGAAAATAGTCTTCTTGAATTTCAGTGTTCCTTTTTCTCATCTGAGTGATTGTTTTGATACTCTGGTACAGTAGCCGCACTCGGAGGTGTCGATATATAAACGTAGTTGTGATCATATGTGATCAAGTCTTTCTTTGAtgaggtgaagaaaaaaaatgagacaaaaaaaaaaaaaaaaaaaaaagaacgtgGGACGGACAAGGGCAGCCTCACAAGAGTGCATGATATCTCTTCGATTATGAGGATGCTTTGGGACCACACTCTTTTGAAACATGATGAAATGAGGCTCCTTTTCTGAAGCAAAGGGTTTTCCAAAAATATCCTTTCACCATAGatgattatcttttttttttcttctttgttttttttttttcttttatcgtGTAGAGTGTACACAGAGTCTTTTCTCCCCTAAGGTAGATACagctccttttcttttttattgtctatTGTTTCAGTGTAGTATCATTGTAAAGGAAACAGGTtgaaagggatttttttttttttttgaggaaagggggaaaaaagaaaaaaggacaggacAGACAAACGCAGGAGTGTACAGTAATTCATGTAGCACAAGAAGCATGGAGGGGGGGTGGTGTCCCTGTGGCAGAAAAAAAGGGCCATTGGTTGGAGGGGTGGAGTTAGACATCCATGTTAGGTGGGAATGATGCCATCGCTGTTTTGGATGCCCCGCCTCAGCTCCAACTCTTCCAGCTTCCGCCACAAGTCCTCGCGatccttctccttcttcttttccCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39665 True 1717 lncRNA 0.40 2 60096155 60097909

Neighbor

gene id symbol gene type direction distance location
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 4347 60061098 ~ 60091808 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 309494 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 331082 59753476 ~ 59765073 (+)
LOC103030186 LOC108435004 coding upstream 592633 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 743030 59297681 ~ 59353125 (+)
LOC103035162 LOC108434989,LOC108258176 coding downstream 167928 60265837 ~ 60273289 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 181930 60279839 ~ 60281890 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 297669 60395578 ~ 60462048 (+)
LOC111190190 NA coding downstream 332952 60430861 ~ 60443507 (+)
rd3l rd3l coding downstream 387994 60485903 ~ 60490965 (+)
G29567 NA non-coding upstream 111042 59887856 ~ 59985113 (+)
G29560 NA non-coding upstream 238573 59857241 ~ 59857582 (+)
G29558 NA non-coding upstream 243631 59852071 ~ 59852524 (+)
G29526 NA non-coding upstream 392045 59700063 ~ 59704110 (+)
G29516 NA non-coding upstream 463687 59632119 ~ 59632468 (+)
G29591 LOC108434993 non-coding downstream 30152 60128061 ~ 60131474 (+)
G29594 LOC108434976 non-coding downstream 59361 60157270 ~ 60162157 (+)
G29596 hif1a,LOC107589062,LOC107743977,LOC107563689 non-coding downstream 67557 60165466 ~ 60177344 (+)
G29639 NA non-coding downstream 184676 60282585 ~ 60285943 (+)
G29641 NA non-coding downstream 189958 60287867 ~ 60288093 (+)
nme6 nme6 other upstream 497823 59586709 ~ 59598332 (+)
atraid atraid other upstream 536393 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 867315 59221266 ~ 59228840 (+)
G29382 NA other upstream 875119 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 983840 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 422433 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1828171 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2723834 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2828109 62926018 ~ 62931133 (+)
G30362 NA other downstream 3237825 63335734 ~ 63345693 (+)

Expression


Co-expression Network