G29594 (LOC108434976)


Basic Information

Item Value
gene id G29594
gene name LOC108434976
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60157270 ~ 60162157 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39683
GTGACCTTAGGCACATGTGAAGCTGCTCCAAAGcattttatagtatttataaGGCTTTTCTATTGAGAATATATACGCCATGTGTGGATAACTTAACATTTGTGTTAGCGGCAATGTGTGTAATTTAGAGTATGTTAGGCATTTTGGACAGTGATATTTTTCTGTGACTGCAAAATGACTAATCAATTATTTCTGACTGCCAGTAAATTCTtacatattgtaaaaaaaatgaaagagttTAAGTAAAGGTTTGAGAACCTGCTTGGGCATGGCAGTGTAATAAAACACCTTCTCAGACTCAAGCTTCCTGTAGACATACACAACATCCAAGTGCTGACAGCTGAGAGCCTCCGAAACAAAATTCTGAATGTGCACCCAGTCCTTTAAAGCAATCCAAATCTTTTCCTTAGGCAAGGGAATCTGTGCATGGTAAAGGCCGTAGAACATGTACAGTGCTCCTGCCCTGATCTGAAAGCTGTACGGGGGCAGGAAGTAACTGTACACCGTGGCAAAGGCAAGGCGAGTGAAAGTTCTTTTCTCCAGGCGTGTGGTCATTCCAAAACACACTGGAGAAGTCCATGTCTCTCCATATAGCTGCAAACTCCTCATATCGCACCGAGTCTGTTTGCTGGAAGCGGCCCAGCAGCTCCTCACAGTCGGATTTAAACGGAACCCAGAAATAATCGCAGAATTTCACCGCAGCTGTTGTCATGATTAATCTGGCAGTGGTGAGAAACCCCAATAACCCTGTGCTGAAGTATCAGTTAGATTTATGTGACTAAATTCAGTAAAGTCAGTTCATGAAGACACGAAGTTTTGCGGACTCGTTGACCAGGAGCTTTAATACCACCTCAATCCATCCATAGAGTCACTAAATCCCAACCAATCAGCTTTCAGTCATTTTTAAACCTAATTAACTTGTTTTGtaacaatataattatttacagcTTTGTGATATTCTCTTCAAATTCCCAAAAAGGTTGGCCTTGtata

Function

NR:

description
PREDICTED: snRNA-activating protein complex subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39683 True 993 lncRNA 0.41 4 60157270 60162157

Neighbor

gene id symbol gene type direction distance location
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 65462 60061098 ~ 60091808 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 370609 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 392197 59753476 ~ 59765073 (+)
LOC103030186 LOC108435004 coding upstream 653748 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 804145 59297681 ~ 59353125 (+)
LOC103035162 LOC108434989,LOC108258176 coding downstream 103680 60265837 ~ 60273289 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 117682 60279839 ~ 60281890 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 233421 60395578 ~ 60462048 (+)
LOC111190190 NA coding downstream 268704 60430861 ~ 60443507 (+)
rd3l rd3l coding downstream 323746 60485903 ~ 60490965 (+)
G29591 LOC108434993 non-coding upstream 25796 60128061 ~ 60131474 (+)
G29580 NA non-coding upstream 59361 60096155 ~ 60097909 (+)
G29567 NA non-coding upstream 172157 59887856 ~ 59985113 (+)
G29560 NA non-coding upstream 299688 59857241 ~ 59857582 (+)
G29558 NA non-coding upstream 304746 59852071 ~ 59852524 (+)
G29596 hif1a,LOC107589062,LOC107743977,LOC107563689 non-coding downstream 3309 60165466 ~ 60177344 (+)
G29639 NA non-coding downstream 120428 60282585 ~ 60285943 (+)
G29641 NA non-coding downstream 125710 60287867 ~ 60288093 (+)
G29662 NA non-coding downstream 189161 60351318 ~ 60353130 (+)
G29663 NA non-coding downstream 194320 60356477 ~ 60356882 (+)
nme6 nme6 other upstream 558938 59586709 ~ 59598332 (+)
atraid atraid other upstream 597508 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 928430 59221266 ~ 59228840 (+)
G29382 NA other upstream 936234 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 1044955 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 358185 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1763923 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2659586 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2763861 62926018 ~ 62931133 (+)
G30362 NA other downstream 3173577 63335734 ~ 63345693 (+)

Expression


Co-expression Network