G29596 (hif1a,LOC107589062,LOC107743977,LOC107563689)


Basic Information

Item Value
gene id G29596
gene name hif1a,LOC107589062,LOC107743977,LOC107563689
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60165466 ~ 60177344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39688
TAAGGGTCCTGCTCCCCTGTGGGGTGGGTGCACGAGCTGGGGAGGCCTCACGACTTCGATTACCACTGAAGGGTGAGACAGGGGCGCTGCGTACCTCCTGCAGCATGTGAAGGGGTGAGGGAACACGGGAAGAGGACTCCTGAGATACAGAGCTGCTAGGGCTAGAAGCTGTAGTTGAAGGAGTGGGTAAGGGCTGGAACAGGGAGCTCATGTCTGAGACTGTGTGGGGTCCAGAGGGGAGGGGGTCCAGCGGAGAGGGGATGAGCAGCTGGAAGTCATCGTCCATTGGAATATAGGGAGCAAGCATCTCCAGGTCGAGATCACCCAtatcTTGAGTGCTGTATGGGGTCTTGGCCTCAGTGTCAATAGCAAACAATTTTTCAACCAAATCCAGTTTGAACTCTGAACCAATGTCTGAATCAACTTGGAAACAGTAATCTATTGGACTGTTGGGCGCCGAAGTGCTGGACCCAGTAGATGGTGTGGAAGGAGTGTTTGCAGCATCTGCACTGCGGTGAGAAGTAGAAGGAAATGCGAATTCCTCTCCTCCAGTCTCTAGTTTGTCCAAAGCTGGAGGGGGCTCACTTGGAGCCAGTGGAGACAGGGGCAGAGGAAGTTTCTCACTGGTAGAGGGCAGCATGACATCATTGTAGAGGGGCACTTCCTTCAGCAACTGCATCTCAGACTCAGAGCTGTTAAAGTCCAGTGAGATGATGGTGTCTCCTGCAGCAGGAGCCAGCACTGTAAGTGCCTCAGGCTCCTCCTTCAGTTTCTCGTAGAGGCTCTCTGGACTCTCCACAGAACATGTCAGCTTCTCCTGCTTGAAGGAATCCATGTCCACCTCAGTTTCCTCTTCTTTGTCCTTTTGtttctcctccttctccacAGCCTTTGGCTCAGTCACTGTCTGCTCTAGGGAGAGGATCATATCTCCCTCCACAATGCCACTGAGAACATAGTtgacacacacaatacactgtgGCTGGGAGTTTTTGGGATTATAAATTACTGTCGCCTGGGTCTCAACCCACACATAGCCTCCCTTCTTAGCCAGCATTCGATACTGGCCTGTTGTAGCCTGGCCCTTTGCgaacaAATTATGATGTGTCTTGGTTAGGTGATCAGAGTCTAGAGCATGGTAGTACTCATACACAGACCTATTAAGCAAGTCATCTGGCTCGTGGCCCATCAGCTCTGTGATTCTCTCATCGCAATATGAGAACTTCATGTCCAGGGTGTGACGGCTTAGGAAAGTTTTGCTGTCCAGAGGCACCTCTATGTTGGAGGGATGGGGGATGGGCTCACAAATTAACACCAGATAAGTAATGGGAGGCTCTCTGAAGCTACTGTCTGCAGAACCCTCACCAGATTCCTGAACACGCACATGCCCTGTGCAGTGGAGGACCTTCCATGTGGCAGATTTTATGTTGACAGTACGTCCTCTGCTAGTGAGTGTGCACTTCATGCGCAGGAAGAAGCTTCTTTCTGTGTTTTGCTCCTTGGTTTTCTTGGACCCTGTCCTGTGCACCAGCATTTCCCTCATTTCCTCATGATCACAAGGGTGTGCAAAGTCAAAAACACTGTGGCCAGTCAGATcaaaCTGTGTAAGGCCCATGCATTTGCAGACATTTTCTGAGAGATAGACCATATCCCCATCCTCAGAAAGCACCATAAGGAAGCCCTCCAATGCCTTTAAGTAGAAGCCATTGAGCTGACTCTCCAGCTCAGACTCTTTCTCTGcatcacCAGAGCTCAGAAGTTTTCTCATGCGCAGGTAGCTAATGGTCAGCCTCATGATGGAGGCCTTGTCCAGGTGGGAGGTGACATTGTGGGGCAGAGGCAGCTGATTTGCTAGTTCGAAGAACACCTCAGACTCCTTCCCCCTGCGGCATCGAGCAGCATCCCTGGACTTCTCCTTCCTGCGCTCTGAGCTCACCCTTTTCTTTTCAGTGGCGACTCCAGTATCCATTCCTGGGTGAAACCTCCTAGTgtgtaaggtttttttttcccgAAGCGCCGGCGCAACAAAACAGCGGCTAGCGGCTAACGCTAGTTCCAGAcccgagaaagagagaggatgaAGGACGTGGCCACCTGTCCTCCCCGAAAAACACCAACAAACCGAGCTAAACGCGACCAAAAACACCCGCTAACACGTCTCCGCTATGTCTCTTGTACAGCCGAGTTCAAGAGGTCGCCCCTCCGTGGTCCTGAAGGTCAGAACATCTGTGTGTATTCCTGCGGTGGGGTTCTCCCCGGCACAAAGAGAGTTAAGTGCTACAGTCTAATGCTGCTCACTGAGGCTCCGCTACTACTACTCTCTAT
>TU39690
ACTATATTACTGATCATTTTGAGTTCTCTGTTTAGTAAATCATGCCTAACAGGAGCATCTACTTACCGCCGAAGTGCTGGACCCAGTAGATGGTGTGGAAGGAGTGTTTGCAGCATCTGCACTGCGGTGAGAAGTAGAAGGAAATGCGAATTCCTCTCCTCCAGTCTCTAGTTTGTCCAAAGCTGGAGGGGGCTCACTTGGAGCCAGTGGAGACAGGGGCAGAGGAAGTTTCTCACTGGTAGAGGGCAGCATGACATCATTGTAGAGGGGCACTTCCTTCAGCAACTGCATCTCAGACTCAGAGCTGTTAAAGTCCAGTGAGATGATGGTGTCTCCTGCAGCAGGAGCCAGCACTGTAAGTGCCTCAGGCTCCTCCTTCAGTTTCTCGTAGAGGCTCTCTGGACTCTCCACAGAACATGTCAGCTTCTCCTGCTTGAAGGAATCCATGTCCACCTCAGTTTCCTCTTCTTTGTCCTTTTGtttctcctccttctccacAGCCTTTGGCTCAGTCACTGTCTGCTCTAGGGAGAGGATCATATCTCCCTCCACAATGCCACTGAGAACATAGTtgacacacacaatacactgtgGCTGGGAGTTTTTGGGATTATAAATTACTGTCGCCTGGGTCTCAACCCACACATAGCCTCCCTTCTTAGCCAGCATTCGATACTGGCCTGTTGTAGCCTGGCCCTTTGCgaacaAATTATGATGTGTCTTGGTTAGGTGATCAGAGTCTAGAGCATGGTAGTACTCATACACAGACCTATTAAGCAAGTCATCTGGCTCGTGGCCCATCAGCTCTGTGATTCTCTCATCGCAATATGAGAACTTCATGTCCAGGGTGTGACGGCTTAGGAAAGTTTTGCTGTCCAGAGGCACCTCTATGTTGGAGGGATGGGGGATGGGCTCACAAATTAACACCAGATAAGTAATGGGAGGCTCTCTGAAGCTACTGTCTGCAGAACCCTCACCAGATTCCTGAACACGCACATGCCCTGTGCAGTGGAGGACCTTCCATGTGGCAGATTTTATGTTGACAGTACGTCCTCTGCTAGTGAGTGTGCACTTCATGCGCAGGAAGAAGCTTCTTTCTGTGTTTTGCTCCTTGGTTTTCTTGGACCCTGTCCTGTGCACCAGCATTTCCCTCATTTCCTCATGATCACAAGGGTGTGCAAAGTCAAAAACACTGTGGCCAGTCAGATcaaaCTGTGTAAGGCCCATGCATTTGCAGACATTTTCTGAGAGATAGACCATATCCCCATCCTCAGAAAGCACCATAAGGAAGCCCTCCAATGCCTTTAAGTAGAAGCCATTGAGCTGACTCTCCAGCTCAGACTCTTTCTCTGcatcacCAGAGCTCAGAAGTTTTCTCATGCGCAGGTAGCTAATGGTCAGCCTCATGATGGAGGCCTTGTCCAGGTGGGAGGTGACATTGTGGGGCAGAGGCAGCTGATTTGCTAGTTCGAAGAACACCTCAGACTCCTTCCCCCTGCGGCATCGAGCAGCATCCCTGGACTTCTCCTTCCTGCGCTCTGAGCTCACCCTTTTCTTTTCAGTGGCGACTCCAGTATCCATTCCTGGGTGAAACCTCCTAGTgtgtaaggtttttttttcccgAAGCGCCGGCGCAACAAAACAGCGGCTAGCGGCTAACGCTAGTTCCAGAcccgagaaagagagaggatgaAGGACGTGGCCACCTGTCCTCCCCGAAAAACACCAACAAACCGAGCTAAACGCGACCAAAAACACCCGCTAACACGTCTCCGCTATGTCTCTTGTACAGCCGAGTTCAAGAGGTCGCCCCTCCGTGGTCCTGAAGGTCAGAACATCTGTGTGTATTCCTGCGGTGGGGTTCTCCCCGGCACAAAGAGAGTTAAGTGCTACAGTCTAATGCTGCTCACTGAGGCTCCGCTACTACTACTCTCTAT

Function

symbol description
hif1a Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; Hsp90 protein binding activity; and enzyme binding activity. Contributes to DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in several processes, including oxygen homeostasis; regulation of gene expression; and vascular endothelial growth factor production. Acts upstream of or within regulation of transcription, DNA-templated and response to hypoxia. Located in chromatin; cytosol; and nuclear body. Part of RNA polymerase II transcription regulator complex. Implicated in lung non-small cell carcinoma; myocardial infarction; prostate cancer; and type 2 diabetes mellitus. Biomarker of several diseases, including arthritis (multiple); invasive ductal carcinoma; kidney cancer (multiple); morbid obesity; and mycosis fungoides.

NR:

description
PREDICTED: hypoxia-inducible factor 1-alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39688 True 2325 lncRNA 0.55 11 60165466 60177344
TU39690 False 1937 lncRNA 0.44 9 60166102 60177344

Neighbor

gene id symbol gene type direction distance location
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 73658 60061098 ~ 60091808 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 378805 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 400393 59753476 ~ 59765073 (+)
LOC103030186 LOC108435004 coding upstream 661944 59488161 ~ 59503522 (+)
fndc4 fndc4,LOC107589087,LOC107723530,LOC107697298 coding upstream 812341 59297681 ~ 59353125 (+)
LOC103035162 LOC108434989,LOC108258176 coding downstream 88493 60265837 ~ 60273289 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding downstream 102495 60279839 ~ 60281890 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 218234 60395578 ~ 60462048 (+)
LOC111190190 NA coding downstream 253517 60430861 ~ 60443507 (+)
rd3l rd3l coding downstream 308559 60485903 ~ 60490965 (+)
G29594 LOC108434976 non-coding upstream 3309 60157270 ~ 60162157 (+)
G29591 LOC108434993 non-coding upstream 33992 60128061 ~ 60131474 (+)
G29580 NA non-coding upstream 67557 60096155 ~ 60097909 (+)
G29567 NA non-coding upstream 180353 59887856 ~ 59985113 (+)
G29560 NA non-coding upstream 307884 59857241 ~ 59857582 (+)
G29639 NA non-coding downstream 105241 60282585 ~ 60285943 (+)
G29641 NA non-coding downstream 110523 60287867 ~ 60288093 (+)
G29662 NA non-coding downstream 173974 60351318 ~ 60353130 (+)
G29663 NA non-coding downstream 179133 60356477 ~ 60356882 (+)
G29679 NA non-coding downstream 204697 60382041 ~ 60382256 (+)
nme6 nme6 other upstream 567134 59586709 ~ 59598332 (+)
atraid atraid other upstream 605704 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 936626 59221266 ~ 59228840 (+)
G29382 NA other upstream 944430 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 1053151 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 342998 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1748736 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2644399 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2748674 62926018 ~ 62931133 (+)
G30362 NA other downstream 3158390 63335734 ~ 63345693 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_01265556_01276178 HIF1AB, HIF1A coding CI01000325 null 1265433 ~ 1276313 (-)