G29608


Basic Information

Item Value
gene id G29608
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60074072 ~ 60091759 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39706
ACATATTTGGCAAAAagcagtatatatagtatacaacCCAAAActagaaatataaaaagtaaagtaataatCACTACATTCTAAATTatgataataacaataaaaaagttaaatatatagGCTTACAGTTACACGTTTGAGTTCAAGTTATTGCTGCCGTAGCCAGTGCTGACGCTGTTCTTCTTTGGATAATTACAGTATACAGTCTGTTGCATAGGACGACTCAAGGCACAGTGTCGTAAGACGAGTGAAGAAACACAATTCTATGCTACATTTTAAAGGCACATGCTGTAGATTCAGGCTCACTCTTCCTCTGTGTGGACCAGGCCTTCCTCCTTGTACTCGTGAGGAAGGTCACTGGCACCCTGTGGGCTCTGGAGGAAGTCCCTGAGGTCACGCTGAAAGGCAACCAGTGTTTTTACATCCAGATAAGGAGCTGTGAAAGGAAGAAGTTCAGAACCGATGCAGGTGTGCATTTAGAAAGCTTTCAGAGAGTAGCCTCTCTCTGTTTAGAGCGGTTTCTGAAGCTCTGCATGGATGCTTTTGAAGGCAAAATGACTTTAGCCCTTGAACTTGCTGTTATTCATAGGAACATTTAGTAGATAGTAAAATGACATGTTGCCGTGACTCTGCTGGTTGAGGGCACATTCTAGAGAGCTGGagaactgtaattattattgctaaaaaaaaaagtgaagtttACGAGGTCAGATTTGGCTGAGAGAAATGTATTGCAATTCCTCTTGCACTCCAGTGATTGCCTTAATCAAAACTGTGATTTTGTGATGTAGGGCTGAATGATATGGTAAAATGATTGTATCTCGatatataaagacatttttagggTAGATCATATTGTTTGCAAAGTTTTGCCATGTAGACAAAAGGCACCACTAGAGTTGGGGTGTACAATATGGACAAATGTGGGCTAATGCTGTTGGACATCCcagtattaatattaaacacaagaCATAAGAAACTCCTATAACATTAAGCTTCTTAAACAGCTGCTTTAGATTcccaataaaagtaaaagtatgaaTAAAAGTATGTGTCCACTAGCATTTAGCCTCaacgcatcctattcatttcaatggagaaAGATGCTGGATGCCGAAATGCATAATGGCCTGTGTTGCGTCAGCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39706 True 1149 lncRNA 0.35 2 60074072 60091759

Neighbor

gene id symbol gene type direction distance location
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding downstream 14472 59882140 ~ 60059600 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding downstream 243181 59792576 ~ 59830891 (-)
LOC107197813 NA coding downstream 369989 59700034 ~ 59704083 (-)
LOC103030505 LOC103030505,LOC108434978 coding downstream 465081 59599420 ~ 59608991 (-)
eif2b4 eif2b4 coding downstream 500461 59562829 ~ 59573611 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding upstream 5729 60097488 ~ 60123478 (-)
LOC103033561 NA coding upstream 36288 60128047 ~ 60145920 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding upstream 71581 60163340 ~ 60177354 (-)
LOC103034514 LOC108434990,LOC108258108 coding upstream 92935 60184694 ~ 60219056 (-)
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding upstream 216176 60307935 ~ 60311646 (-)
G29563 NA non-coding downstream 215733 59858066 ~ 59858339 (-)
G29559 NA non-coding downstream 221604 59852055 ~ 59852468 (-)
G29509 NA non-coding downstream 466226 59607175 ~ 59607846 (-)
LOC111190079 NA non-coding downstream 495677 59576238 ~ 59578395 (-)
G29494 NA non-coding downstream 499536 59574328 ~ 59574536 (-)
G29681 NA non-coding upstream 292244 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 296221 60387980 ~ 60388361 (-)
G29702 NA non-coding upstream 303890 60395649 ~ 60396246 (-)
G29707 NA non-coding upstream 369229 60460988 ~ 60463346 (-)
G29716 NA non-coding upstream 372217 60463976 ~ 60519797 (-)
snx17 snx17 other downstream 521162 59506926 ~ 59552910 (-)
G29478 NA other downstream 635774 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 988186 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 1139283 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1899368 58159207 ~ 58174704 (-)
LOC103034188 LOC108434976 other upstream 57638 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 259513 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 277287 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1201117 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1740082 61831841 ~ 61890729 (-)

Expression


Co-expression Network