G29679


Basic Information

Item Value
gene id G29679
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60382041 ~ 60382256 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39785
tgaaatttgacttttatttgtaacattcccTAAACGTAAgatttcaatggaaaaatgtcacaccacctacaaataaaatacatatacaatattaactaTATACAGTCATTGTTAAGTCCTTCAGTTAACTTCTGTTTACCTTCCACTGTCTTTAAAGCAGCATCCTCCTTGGTGCAACATAAATTTTAACATGCCCACTTAATTTTTCGtttgaac

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04020 Calcium signaling pathway
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
TU39785 True 216 lncRNA 0.40 1 60382041 60382256

Neighbor

gene id symbol gene type direction distance location
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding upstream 100151 60279839 ~ 60281890 (+)
LOC103035162 LOC108434989,LOC108258176 coding upstream 108752 60265837 ~ 60273289 (+)
rhoj rhoj,LOC107743974,LOC108257930,LOC107697308,LOC107701469 coding upstream 290233 60061098 ~ 60091808 (+)
LOC103031133 chrna2b,LOC108434998,LOC107697311,LOC107589091,LOC107723144,LOC107563692,LOC107746381,LOC107701496 coding upstream 595380 59767382 ~ 59786661 (+)
LOC103031439 LOC108434977 coding upstream 616968 59753476 ~ 59765073 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding downstream 13322 60395578 ~ 60462048 (+)
LOC111190190 NA coding downstream 48605 60430861 ~ 60443507 (+)
rd3l rd3l coding downstream 103647 60485903 ~ 60490965 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding downstream 150486 60532742 ~ 60599366 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding downstream 320826 60703082 ~ 60793830 (+)
G29663 NA non-coding upstream 25159 60356477 ~ 60356882 (+)
G29662 NA non-coding upstream 28911 60351318 ~ 60353130 (+)
G29641 NA non-coding upstream 93948 60287867 ~ 60288093 (+)
G29639 NA non-coding upstream 96098 60282585 ~ 60285943 (+)
G29596 hif1a,LOC107589062,LOC107743977,LOC107563689 non-coding upstream 204697 60165466 ~ 60177344 (+)
G29691 NA non-coding downstream 81721 60463977 ~ 60519867 (+)
G29772 NA non-coding downstream 307745 60690001 ~ 60690253 (+)
G29775 xrcc3 non-coding downstream 318089 60700345 ~ 60702123 (+)
G29812 NA non-coding downstream 445481 60827737 ~ 60827940 (+)
G29825 NA non-coding downstream 546866 60929122 ~ 60930577 (+)
nme6 nme6 other upstream 783709 59586709 ~ 59598332 (+)
atraid atraid other upstream 822279 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 1153201 59221266 ~ 59228840 (+)
G29382 NA other upstream 1161005 59220532 ~ 59221036 (+)
mtmr9 mtmr9,LOC107746110,LOC107701508,LOC107723304 other upstream 1269726 59064473 ~ 59112315 (+)
c3h14orf2 NA other downstream 138086 60520342 ~ 60525051 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1543824 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2439487 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2543762 62926018 ~ 62931133 (+)
G30362 NA other downstream 2953478 63335734 ~ 63345693 (+)

Expression


Co-expression Network