G29716


Basic Information

Item Value
gene id G29716
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60463976 ~ 60519797 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39833
agagaccagaggagggagaaagactgtggatagcaacctactcatttgaataaccccgcccctgagggctgcctcgcggtcacagactgcagagcggggcggagcggagcggagctgacggtctgttattggtcccgcccataagcagcccttttaccataaccacaccttttttgaatagagccgaataaagttttaaaaaccgaattctgtggggatataaaaatttgacaatataagcagaggttacactagctgttacatttaaataatggaggtagaattacagtatattagaaaaaaacgtgattgaaagttgtctgttttgccattgaaacctatggggatgggtggagttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttaaga
>TU39837
agagaccagaggagggagaaagactgtggatagcaacctactcatttgaataaccccgcccctgagggctgcctcgcggtcacagactgcagagcggggcggagcggagctgacggtctgttattggtcccgcccataagcagcccttttaccataaccacaccttttttaatagagccgaataaagttttaaaaaccgaattctgtggggatataaaaatttgacaatataagcagaggttacactagctgttacatttaaataatggaggtagaattacagtatattagaaaaaaacgtgattgaaagttgtctgttttgccattgaaacctatggggatgggtggagttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttaaga
>TU39839
agagaccagaggagggagaaagactgtggatagcaacctactcatttaaataaccccgcccctgagggctgcctcgcggtcacagactgcagagcggggcggagctgacggtctgttattggtcccgcccataagcagcccttttaccataaccacaccttttttgaatagagccgaataaagttttaaaaaccgaattctgtggggatataaaaatttgacaatataagcagaggttacactagctgttacatttaaataatggaggtagaattacagtatattagaaaaaaacgtgattgaaagttgtctgttttgccattgaaacctatggggatgggtggagttacacagctttctgcagccgaacagcagggggcgcccgacctgtggtggcttcacttttaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39833 True 420 lncRNA 0.47 2 60463976 60519797
TU39837 False 414 lncRNA 0.36 2 60463976 60519797
TU39839 False 410 lncRNA 0.32 2 60463976 60519797

Neighbor

gene id symbol gene type direction distance location
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding downstream 152330 60307935 ~ 60311646 (-)
LOC103034514 LOC108434990,LOC108258108 coding downstream 244920 60184694 ~ 60219056 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding downstream 286622 60163340 ~ 60177354 (-)
LOC103033561 NA coding downstream 318056 60128047 ~ 60145920 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding downstream 340498 60097488 ~ 60123478 (-)
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding upstream 82613 60602410 ~ 60607157 (-)
xrcc3 xrcc3 coding upstream 177489 60697286 ~ 60702253 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding upstream 211405 60731202 ~ 60735851 (-)
LOC103028984 LOC108412120 coding upstream 649705 61169502 ~ 61201223 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding upstream 850198 61369995 ~ 61430279 (-)
G29707 NA non-coding downstream 630 60460988 ~ 60463346 (-)
G29702 NA non-coding downstream 67730 60395649 ~ 60396246 (-)
G29684 NA non-coding downstream 75615 60387980 ~ 60388361 (-)
G29681 NA non-coding downstream 79514 60384003 ~ 60384462 (-)
G29608 NA non-coding downstream 372217 60074072 ~ 60091759 (-)
G29741 NA non-coding upstream 443 60520240 ~ 60525384 (-)
G29803 NA non-coding upstream 272979 60792776 ~ 60793791 (-)
G29819 NA non-coding upstream 372899 60892696 ~ 60893051 (-)
G29930 NA non-coding upstream 787306 61307103 ~ 61328118 (-)
G29937 NA non-coding upstream 847478 61367275 ~ 61383834 (-)
LOC111191938 NA other downstream 94362 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 99232 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 301910 60149397 ~ 60162066 (-)
snx17 snx17 other downstream 911066 59506926 ~ 59552910 (-)
G29478 NA other downstream 1025678 59437600 ~ 59438298 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 773079 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1312044 61831841 ~ 61890729 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 2617154 63136951 ~ 63288108 (-)
G30376 NA other upstream 2810247 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 2913995 63433792 ~ 63485021 (-)

Expression


Co-expression Network