G29775 (xrcc3)


Basic Information

Item Value
gene id G29775
gene name xrcc3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60700345 ~ 60702123 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39923
GATCCCAGTCCCCCATGTTCCTGTGGATACTGGACAGAGAGGCAAAGCTGCAGTGCAAACTGGGTTTTTCCAGCAGCACTCTCACCTGCTAGCTCTGTTATTCCACGCAGAGGAAGACCACCCCGCAAAAGATTATCCAAAACAGGACAGGCCAGCGAAAGTCTGTGTCCGGGTTCCAAGGAAGGACATTCTCCACGAGCCAACTGTAAAGCTGTGACGGGTGGTGAGCTCCTACAggcagcggcggcagcagcaTGCAGCTCCTTCACCTCCCTCAGAGACAGGAGAGCGAGTCTGTGCTGCAGCTCCGGAGCAGAAACACTCAGCACCTCCCTCACCGATCTCACACAGGCCTTTCTCAGAGCATTCCTGACTCTTGGACTGAGCTCAAGCTGTTCCAAGTCCATCGCATCTTTACACAATGCGTTTAGATCAGTCCGCTTAACCTGCTTAACCCCGCGTGCACCACATTAATGCGattttcatacatttacatcagagAAACTCCAGCGTAGTGTGTTTCCAGGTTAGgaaaacatatgaaaaaa

Function

symbol description
xrcc3 Predicted to enable ATP binding activity; ATPase, acting on DNA; and DNA binding activity. Predicted to contribute to four-way junction DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be located in cytoplasm and nucleus. Predicted to be part of Rad51C-XRCC3 complex. Predicted to be active in replication fork. Human ortholog(s) of this gene implicated in breast cancer; familial melanoma; and pancreatic cancer. Orthologous to human XRCC3 (X-ray repair cross complementing 3).

NR:

description
DNA repair protein XRCC3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39923 True 548 lncRNA 0.40 3 60700345 60702123

Neighbor

gene id symbol gene type direction distance location
ppp1r13b ppp1r13bb,LOC108434983 coding upstream 100979 60532742 ~ 60599366 (+)
rd3l rd3l coding upstream 209380 60485903 ~ 60490965 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding upstream 238297 60395578 ~ 60462048 (+)
LOC111190190 NA coding upstream 256838 60430861 ~ 60443507 (+)
LOC103034839 six1b,six1,LOC108434988,LOC107589069,LOC107697302,LOC107563694 coding upstream 418455 60279839 ~ 60281890 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding downstream 959 60703082 ~ 60793830 (+)
LOC103031412 NA coding downstream 292804 60994927 ~ 61163598 (+)
trnad-guc NA coding downstream 991090 61693213 ~ 61693284 (+)
l3hypdh l3hypdh,LOC107684001 coding downstream 991832 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding downstream 994677 61696800 ~ 61696871 (+)
G29772 NA non-coding upstream 10092 60690001 ~ 60690253 (+)
G29691 NA non-coding upstream 180478 60463977 ~ 60519867 (+)
G29679 NA non-coding upstream 318089 60382041 ~ 60382256 (+)
G29663 NA non-coding upstream 343463 60356477 ~ 60356882 (+)
G29662 NA non-coding upstream 347215 60351318 ~ 60353130 (+)
G29812 NA non-coding downstream 125614 60827737 ~ 60827940 (+)
G29825 NA non-coding downstream 226999 60929122 ~ 60930577 (+)
G29916 jag2,jag2b,LOC106571712,LOC107718403 non-coding downstream 605096 61307219 ~ 61309843 (+)
G29921 NA non-coding downstream 665151 61367274 ~ 61383834 (+)
G29972 NA non-coding downstream 1200640 61902763 ~ 61902969 (+)
c3h14orf2 NA other upstream 175294 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 1102013 59586709 ~ 59598332 (+)
atraid atraid other upstream 1140583 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 1471505 59221266 ~ 59228840 (+)
G29382 NA other upstream 1479309 59220532 ~ 59221036 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 1223957 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 2119620 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 2223895 62926018 ~ 62931133 (+)
G30362 NA other downstream 2633611 63335734 ~ 63345693 (+)
kit kit other downstream 3529121 64231244 ~ 64269695 (+)

Expression


Co-expression Network