G29803


Basic Information

Item Value
gene id G29803
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60792776 ~ 60793791 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39956
CTAGCAGCAGTTCCTTCCTGAGTCACTAAAATTTCTCTGAAAATTAAACATCAACAGCTGcaacagatacaaatctaaaCCACAATGGTACTGTACAATATACCAACATAGTGTAtatcatttaaatattattacctTCAATGGAATGCGGCAAGTGACACATAAAATGGTTATATAACAcagatttacatttatatacatattcatTTTCTTATGCTGCCAtgtgagtaaaaaacaaaaaaagctaaaacatcaaaacattaaaacattaaaaaagataaaacactaCAAGagcacacaaataaaacatctattcacatttttttttcagtaaaacaTCTATTACAAACACATTGGTTAAGAGCCTACTTGTGCTTCTGGAACATCAGAAACGGCTGTCATAAAATTCAAGAACAAAAACAGGTTGAGTGCGAATGACCTTAAAAACAAATGTGGACGCAGAACAATTCATCCAGAGAGATAACAAcccttgcaaaaaaaaaaaaaaaaatgtgtgagtgAGACAGAGGTGTACACTTCACTAATGAACACATCTGCCTGGGCTTAGTGTCCAGCTATATCACTGGCATAACAGGATGCTTAACAGCTTATTAGGTTTCCTCTTAGGCATGGGCTTGGTCTGGTAAACATCCCTTCCATAAAGTGACTACAGCAACGTACAGCTGCTGGATTAACGTGAGACTAATGGTCCGAAACACAATCTAAAGCCACGTCTCGCTCACGTGTCACTGTGCCAGATGCAGATGCGCTGGAGCTCAACACGTCTGCCGGCGCATAAGAAGCAGCGATATAGGAATATTTCATGGCAACAACAATAGCACACACGTCTTCTCCTGTTCTCCTGTTCTCCTGTCTCCACAGGGAGGAAGGCAAGGTTTCTGGGTCTGATGAAAAGCATCACTCGCTGGAGAGAGGGGGGAAGAATACTGCAGACTAGAAAACCTCCTCCTCTTCAGCCTCACAGCCATATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39956 True 992 lncRNA 0.54 2 60792776 60793791

Neighbor

gene id symbol gene type direction distance location
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding downstream 56925 60731202 ~ 60735851 (-)
xrcc3 xrcc3 coding downstream 90523 60697286 ~ 60702253 (-)
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding downstream 185619 60602410 ~ 60607157 (-)
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding downstream 481130 60307935 ~ 60311646 (-)
LOC103034514 LOC108434990,LOC108258108 coding downstream 573720 60184694 ~ 60219056 (-)
LOC103028984 LOC108412120 coding upstream 375711 61169502 ~ 61201223 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding upstream 576204 61369995 ~ 61430279 (-)
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding upstream 913900 61707691 ~ 61815586 (-)
LOC103031530 NA coding upstream 1202562 61996353 ~ 62008626 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding upstream 1216016 62009807 ~ 62039839 (-)
G29741 NA non-coding downstream 267392 60520240 ~ 60525384 (-)
G29716 NA non-coding downstream 272979 60463976 ~ 60519797 (-)
G29724 NA non-coding downstream 291584 60498211 ~ 60501192 (-)
G29707 NA non-coding downstream 329430 60460988 ~ 60463346 (-)
G29702 NA non-coding downstream 396530 60395649 ~ 60396246 (-)
G29819 NA non-coding upstream 98905 60892696 ~ 60893051 (-)
G29930 NA non-coding upstream 513312 61307103 ~ 61328118 (-)
G29937 NA non-coding upstream 573484 61367275 ~ 61383834 (-)
G30001 NA non-coding upstream 1114912 61908703 ~ 61917427 (-)
G30011 NA non-coding upstream 1142939 61936730 ~ 61937164 (-)
LOC111191938 NA other downstream 423162 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 428032 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 630710 60149397 ~ 60162066 (-)
snx17 snx17 other downstream 1239866 59506926 ~ 59552910 (-)
G29478 NA other downstream 1354478 59437600 ~ 59438298 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 499085 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1038050 61831841 ~ 61890729 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 2343160 63136951 ~ 63288108 (-)
G30376 NA other upstream 2536253 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 2640001 63433792 ~ 63485021 (-)

Expression


Co-expression Network