G29825


Basic Information

Item Value
gene id G29825
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60929122 ~ 60930577 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39978
CTGCTCTCGAGAaggttgaaaagaagatggagaagtTTCAGCGTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaaaatacagaacacatgtaaacaactaaagaaaaacagaacatggcacatgtaaataaatcaaataaacacagcacagactgcatgaaattggatttctttatttgttctttaaaagtttggagaaaggaaacctgtGGAATACAAAAGAAACTTGAAAAATTACTGCATTTGATACATggatataattaaacattttaagaacattacctaccttttattatcctttctttttctgcGAGAAAATATCCTGTTTAAGGAAATGAAGACAAGAAATATGACTGTGTTAAACTTGGTGTTGTTTGGATTCagtatttacttcatttatatttatataaaacatttttgcaattattattGCATTGGTTTTGGCACAAACCAATTACtaatgcatctcagaaaatctgaAGATCATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39978 True 673 lncRNA 0.43 2 60929122 60930577

Neighbor

gene id symbol gene type direction distance location
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding upstream 135292 60703082 ~ 60793830 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding upstream 329756 60532742 ~ 60599366 (+)
rd3l rd3l coding upstream 438157 60485903 ~ 60490965 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding upstream 467074 60395578 ~ 60462048 (+)
LOC103031412 NA coding downstream 64350 60994927 ~ 61163598 (+)
trnad-guc NA coding downstream 762636 61693213 ~ 61693284 (+)
l3hypdh l3hypdh,LOC107684001 coding downstream 763378 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding downstream 766223 61696800 ~ 61696871 (+)
LOC103031223 NA coding downstream 1019894 61950471 ~ 61983459 (+)
G29812 NA non-coding upstream 101182 60827737 ~ 60827940 (+)
G29775 xrcc3 non-coding upstream 226999 60700345 ~ 60702123 (+)
G29772 NA non-coding upstream 238869 60690001 ~ 60690253 (+)
G29691 NA non-coding upstream 409255 60463977 ~ 60519867 (+)
G29679 NA non-coding upstream 546866 60382041 ~ 60382256 (+)
G29916 jag2,jag2b,LOC106571712,LOC107718403 non-coding downstream 376642 61307219 ~ 61309843 (+)
G29921 NA non-coding downstream 436697 61367274 ~ 61383834 (+)
G29972 NA non-coding downstream 972186 61902763 ~ 61902969 (+)
G29974 NA non-coding downstream 976006 61906583 ~ 61907066 (+)
G29963 NA non-coding downstream 978126 61908703 ~ 61917624 (+)
c3h14orf2 NA other upstream 404071 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 1330790 59586709 ~ 59598332 (+)
atraid atraid other upstream 1369360 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 1700282 59221266 ~ 59228840 (+)
G29382 NA other upstream 1708086 59220532 ~ 59221036 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 995503 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 1891166 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 1995441 62926018 ~ 62931133 (+)
G30362 NA other downstream 2405157 63335734 ~ 63345693 (+)
kit kit other downstream 3300667 64231244 ~ 64269695 (+)

Expression


Co-expression Network