G29916 (jag2,jag2b,LOC106571712,LOC107718403)


Basic Information

Item Value
gene id G29916
gene name jag2,jag2b,LOC106571712,LOC107718403
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61307219 ~ 61309843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40091
gtgtgtgtgtgtgtgtctctgtgtgtgagagtgtgtgtgtgctcgcaTTTGTGTTTGTGCATATATACACGCtcggatagagagagaaaataaagaagaagaagaagaagaagggacAAACACCAGAGAATGTGGCACAGAGCCCAGTGAGGAGAGGAGTACtgaagagagagatactgacTGATGTCACAGTTCTGTCCGGCCCATCCTTGAAAGCAGTCACAATGATATCCACCAATCAAGTTTTTGCAAGAGTAAGCGTTAACACAAGGCTTCCCCACACACTCATTTACATCAATCTTGCAGGTCTTCCCAGCCCACTGCGGAGGACAGAGACACTCGAAGCCGTTCTCCAGATCGATACACGTCCCCCCCTGAGCACAGGGACTGGAAGCACACTCGTCCATGTCTGcaatacagaacaaaaaaaaaaaaatgtcctcaGAGCCACATAAAAGACAAGCTGCTGGAAACTTTAAGCCTGAGCTCAGTTCAGAGCTAGGCTTtcaaaacaaaactgttataccattaaaacaaaaaaataatacataaataaaaaaaa

Function

symbol description
jag2b Predicted to enable Notch binding activity and calcium ion binding activity. Acts upstream of or within animal organ development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of protein-containing complex. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural rod; digestive system; mesoderm; nervous system; and trunk. Orthologous to human JAG2 (jagged canonical Notch ligand 2).
jag2 Enables Notch binding activity and growth factor activity. Involved in regulation of cell population proliferation; spermatogenesis; and thymic T cell selection. Predicted to be located in membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: protein jagged-2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40091 True 562 lncRNA 0.52 2 61307219 61309843

Neighbor

gene id symbol gene type direction distance location
LOC103031412 NA coding upstream 143621 60994927 ~ 61163598 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding upstream 513389 60703082 ~ 60793830 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding upstream 707853 60532742 ~ 60599366 (+)
rd3l rd3l coding upstream 816254 60485903 ~ 60490965 (+)
LOC103036511 rtn1b,LOC108434986,LOC107560379,LOC108257846,LOC105897731,LOC107589072 coding upstream 845171 60395578 ~ 60462048 (+)
trnad-guc NA coding downstream 383370 61693213 ~ 61693284 (+)
l3hypdh l3hypdh,LOC107684001 coding downstream 384112 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding downstream 386957 61696800 ~ 61696871 (+)
LOC103031223 NA coding downstream 640628 61950471 ~ 61983459 (+)
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding downstream 674796 61984639 ~ 61990664 (+)
G29825 NA non-coding upstream 376642 60929122 ~ 60930577 (+)
G29812 NA non-coding upstream 479279 60827737 ~ 60827940 (+)
G29775 xrcc3 non-coding upstream 605096 60700345 ~ 60702123 (+)
G29772 NA non-coding upstream 616966 60690001 ~ 60690253 (+)
G29691 NA non-coding upstream 787352 60463977 ~ 60519867 (+)
G29921 NA non-coding downstream 57431 61367274 ~ 61383834 (+)
G29972 NA non-coding downstream 592920 61902763 ~ 61902969 (+)
G29974 NA non-coding downstream 596740 61906583 ~ 61907066 (+)
G29963 NA non-coding downstream 598860 61908703 ~ 61917624 (+)
G29976 NA non-coding downstream 603221 61913064 ~ 61915152 (+)
c3h14orf2 NA other upstream 782168 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 1708887 59586709 ~ 59598332 (+)
atraid atraid other upstream 1747457 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 2078379 59221266 ~ 59228840 (+)
G29382 NA other upstream 2086183 59220532 ~ 59221036 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 616237 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 1511900 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 1616175 62926018 ~ 62931133 (+)
G30362 NA other downstream 2025891 63335734 ~ 63345693 (+)
kit kit other downstream 2921401 64231244 ~ 64269695 (+)

Expression


Co-expression Network