G57701


Basic Information

Item Value
gene id G57701
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 13006643 ~ 13023138 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU65732
CACTGGATGTCTTTTCGCCTGCTGCAAATGCATACTGGCCCTCTTCATCCTTCATGGCATTGATGATGGTCAGGCTGTAGCGCTTCCCTTTGGACTCAATTTTGTATTTGGGTCCAGCCTTGAGAGGCTGATTCTTGAAGGTCCAATAAGCATCTATACCAGTGTGGGACAATTCTACTTCAAAGGTGACATTCTGAGTTTCAGTGCACACACAGTCCTCCATGTGCTTGACGATGCTGACCTTCTCAATTGTCAGTTTACAAGTTGTTTCCACTCTGCCAACAGCCATCTTATATTGTCCTTCATCAGAAGCAAAGGATCTGTTCAAGACCAGTCTCTGTTTGGTCCCTTTGGCAACCATCTGGATTCTGTCACTAGCTACAATGAGCTTGTCATTTCGGTACCATTTCACTGAAGCAACATCAGAGGCAGAGATTTTAGCTTCTAGCACTGCCTTCGTACCCTCAATAGAATGGACGTCCTTAAGAGGAGATATTATTTCAATTGTTTGGACAGTCAGTTTTCCAGTTGTAGAAATGTCTTGAATAGGAACAACAAATGAGTAGATTCCTGCATCATCCCTGTTGACATTTTCAACTAGAAGTTTGTGGACATGTTTGTCAATGACGATGTGAATTCTGTCAGAGGAAGAGATGGGCTGGCCATTTTTCATCCAAGAACCCTCCACATTTTCCTGAGAGAATCGCACCTCCAACTGGGCAATATCACCCTCACAGACTGTCAAGTCGGAGAGGCCTTGCATCAGAGTTACAGGGCGCAATTTCATTTTCAGTGTGGCACTTGTCTTCAGATCACCCGCTTTAAAAGTATATTTGCCTTGGTCTTCCTTCCTGACATCTTTTACAGACAAGGTGTGTCGGCCACGACGAGAGGATACAACATATTTTAAGCTTGGCGTAATTTCTTTGTTCTCAAAGTACCAGGTGCCTTCTGCATCTTCACGGGACAGTTCACACTCAAACTCTCCAGAGTATGTTTCAGGCACTTCCACGCTCTCTAAATGTTTAATCATTTCCAGTGGTGCACCTTCAACATGAAGTCTGGCAGTGGTTCTTATGTGGTCTTCATCAGCTACAGCACAAGTGTACTCTGCATCATCTTGCATATTGATTGTCAGCACAGATAGGAAGTGCACTTTTCTGTCCGAGTGCATCCTGTATTTGTCTCCAGAAAAAATTTCAGCATTGTTCTTCATCCATTTGACCTTGACAAATGGCTCATTTGTCTCACATTCAAATGTTGTCATTGTGTCTTTCTCTTTAGCAAAGGCATCCTCCAGTGTCTGGGTAAAAGATACAACTTGCTTGGCTTGCACCAACAAGAAAGCATGGCTTGAGGCCTCACCAGCAATGTTAATGGCTTTGACCATGATACTAGCAGAATCCTCAGCTGAGACATCTGTAATTACTAATTCACAGACATGGTCCTCAGGCCAATACCAGTAAACACGATCTGACTTCTCAAGTAAAATGCCGTTTTTGAACCACTGGCACTCTGGATCTGGTTTACCAACAACCCTACAACGGAAGCGAACTTCATCATGACCTGAAACTGTCTGGCTCTGAATTCTTTCCAAGATCTTTGGAGCCTCCATGCTAGGAGAGAGAGTGACTTTCTCAGGTCTGATTGTTGGAATGGTAAGTTTGCCTTCCTCCTCCTCTTTTTTCTTTTCTGACTCAGGCACCTCTTTGGTCCAGTGCAGAAGTTCGTCTTTTCTCTTTTTTAACATTCCTTCATAAGACTCATCCTTCCTGCGAGACTTCATCTCAACTGAGGATATGGCTTCATAATAGCCCTCTTCAGTCCTGCGTTTAAATTTGCTTCGCAGCTCTTCTGTCTCTTCTGTGGATTTTTCATGAACAACTCTCTCAACCTTCCTCAGTCGGACAACCTCTTTTGCTTGTGAAGCCTCTGCAGGTTTATCTACCTTCACAACATCAAAAGATACTCTGCCAGGTTCAGGGCCAGGTGCCTCTGGAGCCTTCATCTCAGGAGCACGACGCAAGATTGCCCTGAAGTCTTCTTTCTGTTGGATTTCAAGCTTGACAACATGCTCAGCTGTACCCTCTGGGTTCTCAGCCAATAGTTTGACATCTCCAGAATCATAGGACTTACAGTCAGTGATTTCTAAATAGTGAATGCCATCGTAGTGTAGTCTGAAACGTTTGCTCTTTCGAATGAGCTGTCCATTGAGGTACCAGTTAACTTTGGGAGTGGGGTAACCGGTCACTCGGCAGCGATATTTGGCTGTTTCTCCCTCAAATACTCTCATGGGTTCTGGGAGCAAGACAATCTCTGGCTTGGTCTTCTCAGTCATGTCATCCCCAGTTACTCCAGAAGGTGCGCCCTCATGGGCAATTCGCTCCATTTCATCCATTCTCTGTACTTTTCTTCCCTCTGGCAACTGACTGTCCTCCACCAGACTCTTTTCATCTTTCACAATTAGTGTAGCAGAGGTCTGATCAGCACCAAATTTGTTGGTGGCTCTGCAGGTAATGACGCCACTATCTCTAGAATAAGCAACTTCATAATCAAGACTGCAATAGCCAAACTCATTGATCATACGCAGCCTGTTAGCAGCTTCCAGTGGCTTGCCATCATGGAGCCACTCAACAACCATAGTTGGGTCTCCAATAGGGGTCAGTCTGCACTCAAAGTGCACAGGCCCGAATCGCTTCAACCTGACTGAAGTAAGCTTCTTTTTAAAGTGTGGCTTCTGTTGCTTTTCCTTGTCATAGAGGTCACCCTCTTCCCACTGTTCCTGACCATAGCGAAGATGCAGTGGTTCAATCTCTGGTGGAGCAACATCCTTAGCCTTATATGTTCCTTTGGGAATGATGAGTCTTCTTTCTGGTGAAGGTTCGGTGTACTCTACCTCCACATTGACTCTGCAGCGAGTGGTATCCCTGCCAGCTTTGTTTATAGCTGTGGCTGTGTACCACGCACTATCAGAGCCGGAAGTCTGAGGAATCTGGAAATGTGCCTGTCCCTTGGTAGCCTCAATTTTGATGTGAGGGTATTTATGAGGAGAGATAATGTCACTGTTTTTCAGCCAGACAATGTCAGGGAGGGGGTTTCCAATGGCTTTTACTGCCAACTCAACCAAACTTCCTTCCTTAACACTGATATTCTTTAGCTTTTCAATGAACTGGGGTCGGACCAAATTTTCCTTTGCTTCAACAGTAAGAGTCATAGAAACAGTTGTCTTTCCAGCTCTGTTCTGAGCAACAACCGTCCACTCTCCGGAGTCCTGAGGCATGGCAGGAACCACAATCATTGACTGAGTTCCATCCTCCTTTACCACTATCTTGTGGGTGTAGTCATTGACCACTTGTTGTCCATTGTGGAACCAGTAAGTGTCGGGCATAGGTCTTCCGACTACTTTTAAGTCAAACCTTGCAGTCTGTCCTTCAGAACACCTGAAGGATGATGGCTTCTGTACAAAGACAGGCTTATATAGCCTCTCCAGTTGACTCTCATCAGTGTCATCAAGTCTACGAGCAGGAGAGCGGCTAACAGAACGAGCAGGAGAACGTCCAGGGGAGTAGCTAGTTGAGCGAGCAGACATTGGAGATGTAGACTGGACTCTTCTCACAGCTTCGGCTTGAGGGAAGTAAGGCTGAGCAGCTGCAGTGGACTCTACATAGAGCTTTCCGGAACTGACAGCGTTACCCTTCATATTGCTGGCAAATGCAGTATAGATGCCCTCATCTTCTGGCAGCACCACAGGTAGGCGCAGACTGGCTCTTCCGTCTTGTAGAACCTCCATCTGATAGCGGCCTCCATGTTTAATGCGCTTGCCATCTTTATACCAGGCAATCTTTGGTAATGGTGTTCCTTCCATCTTGCAGTGGAAAGTAACACCCATTCCTTCCAGAATTCTGTAGCTTTTAACAGGAGTGCTAAATGAGGATCCGACAGCCTCATGCTCAGCAACATTCATGACCATCTCCTCACCATCCTCAATCACCAGCTCTCGGTAAGTTATTTTAAGGATGCGAATTTCAATCTCTTGGATTATTTTTCGTTCAATTGCAGATATTTGAAATTCCGTCTCTGAGATGAAGGATTGCATCATCTGTGTTTGCTGAGCCATCCTCCTCTGCATGAGCTCTTTTTCATATTCACTTACAACTACAGGGGGCACATCTGCCACTCTGGGCTCCTGCACCATTGTCGTCACTTCCGTTACATATGTCACTTCCTGTTTCTTCATATAGGCTTCATACTCCTCTTCCTCAAAGAGGCTTGTGGAAGCAGATGCCTCTCCGTGTTGGTTCTTGGCAAAGATGGTGTACTCTCCAGCATCATCAGCAAATGTCATAGAAATTTCCAACTTGCACTCCCCTGTTTCCTTGTTATAGCTAACTCTATATCTGTATCCAGTAGTGAGTAGAACTCCACTCTTCTTCCAGTAAATATGGGGCTTGGGGCTTCCTCCGATCTGGCACTCAAAGACAACACTGCCTCCTTCGACCAGCTTCTGAAGCACTGGCTTCCTCACAAAGAAAGGAGCAACAGGTGCTCCAGTGTCCACAGAAACCGCGCTTATTTCAGACTCCTCTTTGGCTTCAATGACAGTCTGTTTCTCCTGGACAGTTATCTCCTCTCTGCTCTCAATCTCCTCAGACACTTTGACAAGCAGGTAGCAGGAGGTGCTGATAGTTCCAGCCTCACTGGTAGCAGTGCAAGTGAAGCGGCCACTATCTTCAGCAAAGGCCTCACGGATCACCAAGCGGGCATAGCTGTTTTCATAAGTGATCTGGAAGTCAATGGAGTGCTCAATTCTGTAATCTTCTCTGAACCACATAATAGCTGGGGTGGGGTGACCTGAAATCTGGCACTCCAGAGTGACAGACTCTCCCTCTGTGACAGTCACATTCTTCAAACCTGCGATCAAGGTAGGTGGCACTACAGGCTCTTTGATAGCTGAGGGGATCGCTGCAGTCTCAACAACCTCTTTGACAGCACCAGCTTGTTGCTGAACAGCAACAGATCCCTCCCAACGCTGTTCCATTTGGACACGGGTAGAGGTCGTCTGGACTTGTGTTGCTCCAGCAATCATGCGGGTGTAGCTGGCTTCTGAAACATACCCCGCTTGTTTCCATGGGGGCAGGACCTCAGAACCCTGTGTGACCTGTTTGCGGGTCATCACAGGGGATTTGACTGGTCTAATTGGGGAAACAGACAGTCTCGTAGATGGAGACACAGCTCTGACAGGAGTGGGTGTCGGGCCCTTAACATGCCTCACAGGAGAGGGAGACTGTTGGCGAGCTGCTGACACTTTAGTCACTTGTGAAGGGGGGGATTTGGAGGTTGGTTTAGGGGGCACACGAGGTGGAGTCTTATGTGCCAGCTGTTGGGTCACAACCCCACCCTCTACTTGCATTTGCATCATGGCTGTTGCAGAGGCCTCGTAATGAGCCTCCATCCTCTTCTCCACTCTAGTCTGACGAGCCTGTGAAATCTGAGAGGCTGAAATGATTGTTTTTGACTTCTTTGCAGGTACGGCTTCTTCTTCGCCCTGAACAAGCAACTCTGCAGTTGAAGTTGCACGTCCACTGCTGTTAGAAGCACTGACAGAGTAGGTTCCAGAATCTTCTGGGAAGGCCTCGGCAATCAACAAACTGTAAAGGTCTCCATCCTGTACAATCTGAAAGTCAGCAGAGCTCTGAATCTCAGCTCCCTCTCTGTAGAACTTTACCACAGGTGCAGGGATTCCTGTAACTCGAACATCTAGTCTCACTTGGCTCCCTTGTCTCACAGTCATACTTTGTAGTCTCTGAATGAAGTTTGGTGGCGCAGTTTCAGCTGTAACCAGCAGTTCAGCAGTGCTAGTGGCTTGTCCAGCGCCATTGGTGGCTCTCACAGAAAATCTTCCGCTGTGTGCGGCTGTCACGGCGGGGATCATCAGAACAGCGCGGCCATCGCTGAACGAGATCTGAGCGCCGGGCAGAGCGGCAGCAGTAAGAACCTGGCCATCACGAAACCAGCTCACCTCTGGAACTGGATTACCACTAACTTGAGCTTCGAACGTTGCAGCACTACCCTCAAGTGCCACAACGCTCTGAAGCGGCTGTGTAAATGTTGGCGCCTGTGTTGACATGGTGGAAGACACCTTGTGTCCAAGAGTGCCTTGAATTGGAGGGACGAAGCCCAAAAGGTTTTGTCTTCTGAAACAAAGTCCTTATCCAGATATGATTTCAGAAAACACAGTGTGAGAACGGATGAGCCTCGAAATATCCCAAAAAACAAAACTACACAGGGTCTTAGCCGTGTAGTTTTGCTTTTTCCCTTGCAATCCCTACACCCGAGGCAAGGCTGGGAATGCTCCAACTGCTCAGAAGTGTTAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU65732 True 6375 TUCP 0.47 24 13006643 13023138

Neighbor

gene id symbol gene type direction distance location
CI01000009_12854692_12859028 NA coding upstream 145612 12854193 ~ 12861031 (+)
CI01000009_12646484_12653748 GULP1, GULP1A coding upstream 352786 12646484 ~ 12653857 (+)
CI01000009_12504532_12504815 NA coding upstream 501749 12504380 ~ 12504894 (+)
CI01000009_12432736_12435509 NA coding upstream 570752 12432538 ~ 12436017 (+)
CI01000009_12387605_12388405 LRRC3 coding upstream 615978 12385222 ~ 12390665 (+)
CI01000009_13194613_13197758 NA coding downstream 171299 13194437 ~ 13199701 (+)
CI01000009_13394582_13476351 UBE2E3 coding downstream 369168 13392306 ~ 13476807 (+)
CI01000009_13549003_13580198 ITGA4 coding downstream 525865 13549003 ~ 13580233 (+)
CI01000009_13696525_13718933 SSFA2 coding downstream 673387 13696525 ~ 13718933 (+)
CI01000009_13752424_13753460 NA coding downstream 729286 13752424 ~ 13753823 (+)
G57739 NA non-coding upstream 80401 12923993 ~ 12926242 (+)
G57756 NA non-coding upstream 411898 12528533 ~ 12594745 (+)
G57911 NA non-coding upstream 524611 12481744 ~ 12482032 (+)
G57903 NA non-coding upstream 532113 12473935 ~ 12474530 (+)
G57900 NA non-coding upstream 536039 12470282 ~ 12470604 (+)
G58005 NA non-coding downstream 17188 13040326 ~ 13047175 (+)
G58004 NA non-coding downstream 18675 13041813 ~ 13061580 (+)
G58023 NA non-coding downstream 100039 13123177 ~ 13124892 (+)
G58088 NA non-coding downstream 201702 13224840 ~ 13225681 (+)
G58103 NA non-coding downstream 223203 13246341 ~ 13248989 (+)
G57691 NA other upstream 88178 12906444 ~ 12918465 (+)
G57682 NA other upstream 114304 12825469 ~ 12892339 (+)
G57811 NA other upstream 1071392 11933942 ~ 11935251 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other upstream 1239699 11761606 ~ 11766944 (+)
G58028 NA other downstream 117240 13140378 ~ 13143608 (+)
G58382 NA other downstream 1010421 14039757 ~ 14039901 (+)
G58455 NA other downstream 1223557 14246695 ~ 14258526 (+)
G58558 NA other downstream 1473798 14496936 ~ 14501514 (+)
G58649 NA other downstream 1626586 14649724 ~ 14652022 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001089 LOC107698997 coding CM030137.1 CM030137.1 14404322 ~ 14473499 (+)