G29921


Basic Information

Item Value
gene id G29921
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61367274 ~ 61383834 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40101
gtgtgtgtgtatatatattatcaaaTCATATTAtctatttgaaatatatatatatatatgcatcgAGTGCAGacatttaatgaaaaacaataagaaatgAATACAAAGTATACAAAGTACTTACAGCATAGACAGTATTTTTCCGCTGttgaaattacaataaaatcaaGCATAAAAAGCACTGGTGTAGAACAGAAATTCATTTCATTCtctccggaaaaaaaaaaaaaaaaaacctaactaaatattaataagaTTAAGTGGGACATATAAAacataacacatatatataaaaaaaacactccatcAAGTGCCCAGTGATAAAACTAATAGCCCAAAATAGTATTAAGAGGCTTAAGAAGAGAAAACATCCAGTTCGGATTTCATATGCATAtgcttttggtgtttttttttcgttaAGATACAATATTATGTTAATcatatgtttaataattaatgttaaaacaataaatgttaaaacagtCACAAACATGTATGTATGTGCCATATACACGATTCATTAAAGGTATACTATGCATACTTATATTCTGTTACCCTCCGTTGATGTTCTGAACATATTGAAAAGGTTTTAACTGATATGGCGAGAGGGATCCAAGCTCAGGAGGCCTCTGTAGACTAAACGCTCAGTTCAAACCATAAAAACCAACGTGTTTCACAGAAGGCAAACCTGGACACCAATTCTGAACTCAACACCTAGATTTTGAAAGGCATGTATGGAGGAGAATGGGTGTTCTGAACAGTGGCATTTTTAACGTCTTTCattaatgaacattttaaatagtcAAAAGCCTTAAATACTTAAAGCCTTACGTAGTTCACATCGTCAGAGAACAAAAAGACAGCAAATCAGTTTCAATCGTACTTCACAGATGATTCAAGTGATATAATAATGAGGACTCTGCTGCCACAAAAGCAACGAAACACACCAACAACAGCTCTGAGACTATGAGAAGGAAAGTAGTAGTGTGAGTAGTGTATAACTGCACCCGCAGAGACGGTGCTCgtcaatattataatttatccaaaattattttgtgttgctgaagaaaacaactattggctcctggcagcatgtgatagctcaTGACatcaggttttatttattttatttttttttttattttt

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40101 True 1146 lncRNA 0.46 2 61367274 61383834

Neighbor

gene id symbol gene type direction distance location
LOC103031412 NA coding upstream 203676 60994927 ~ 61163598 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding upstream 573444 60703082 ~ 60793830 (+)
ppp1r13b ppp1r13bb,LOC108434983 coding upstream 767908 60532742 ~ 60599366 (+)
rd3l rd3l coding upstream 876309 60485903 ~ 60490965 (+)
LOC111190190 NA coding upstream 923767 60430861 ~ 60443507 (+)
trnad-guc NA coding downstream 309379 61693213 ~ 61693284 (+)
l3hypdh l3hypdh,LOC107684001 coding downstream 310121 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding downstream 312966 61696800 ~ 61696871 (+)
LOC103031223 NA coding downstream 566637 61950471 ~ 61983459 (+)
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding downstream 600805 61984639 ~ 61990664 (+)
G29916 jag2,jag2b,LOC106571712,LOC107718403 non-coding upstream 57431 61307219 ~ 61309843 (+)
G29825 NA non-coding upstream 436697 60929122 ~ 60930577 (+)
G29812 NA non-coding upstream 539334 60827737 ~ 60827940 (+)
G29775 xrcc3 non-coding upstream 665151 60700345 ~ 60702123 (+)
G29772 NA non-coding upstream 677021 60690001 ~ 60690253 (+)
G29972 NA non-coding downstream 518929 61902763 ~ 61902969 (+)
G29974 NA non-coding downstream 522749 61906583 ~ 61907066 (+)
G29963 NA non-coding downstream 524869 61908703 ~ 61917624 (+)
G29976 NA non-coding downstream 529230 61913064 ~ 61915152 (+)
G29977 NA non-coding downstream 553830 61937664 ~ 61937976 (+)
c3h14orf2 NA other upstream 842223 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 1768942 59586709 ~ 59598332 (+)
atraid atraid other upstream 1807512 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 2138434 59221266 ~ 59228840 (+)
G29382 NA other upstream 2146238 59220532 ~ 59221036 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 542246 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 1437909 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 1542184 62926018 ~ 62931133 (+)
G30362 NA other downstream 1951900 63335734 ~ 63345693 (+)
kit kit other downstream 2847410 64231244 ~ 64269695 (+)

Expression


Co-expression Network