G29937


Basic Information

Item Value
gene id G29937
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61367275 ~ 61383834 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40118
aaaaataaaaaaaaaaataaaataaataaaacctgatGTCAtgagctatcacatgctgccaggagccaatagttgttttcttcagcaacacaaaataattttggataaattataatattgacGAGCACCGTCTCTGCGGGTGCAGTTATACACTACTCACACTACTACTTTCCTTCTCATAGTCTCAGAGCTGTTGTTGGTGTGTTTCGTTGCTTTTGTGGCAGCAGAGTCCTCATTATTATATCACTTGAATCATCTGTGAAGTACGATTGAAACTGATTTGCTGTCTTTTTGTTCTCTGACGATGTGAACTACGTAAGGCTTTAAGTATTTAAGGCTTTTgactatttaaaatgttcattaatGAAAGACGTTAAAAATGCCACTGTTCAGAACACCCATTCTCCTCCATACATGCCTTTCAAAATCTAGGTGTTGAGTTCAGAATTGGTGTCCAGGTTTGCCTTCTGTGAAACACGTTGGTTTTTATGGTTTGAACTGAGCGTTTAGTCTACAGAGGCCTCCTGAGCTTGGATCCCTCTCGCCATATCAGTTAAAACCTTTTCAATATGTTCAGAACATCAACGGAGGGTAACAGAATATAAGTATGCATAGTATACCTTTAATGAATCGTGTATATGGCACATACATACATGTTTGTGactgttttaacatttattgttttaacattaattattaaacatatgATTAACATAATATTGTATCTtaacgaaaaaaaaacaccaaaagcaTATGCATATGAAATCCGAACTGGATGTTTTCTCTTCTTAAGCCTCTTAATACTATTTTGGGCTATTAGTTTTATCACTGGGCACTTgatggagtgttttttttatatatatgtgttatgtTTTATATGTCCCACTTAAtcttattaatatttagttaggttttttttttttttttttccggagaGAATGAAATGAATTTCTGTTCTACACCAGTGCTTTTTATGCttgattttattgtaatttcaaCAGCGGAAAAATACTGTCTATGCTGTAAGTACTTTGTATACTTTGTATTcatttcttattgtttttcattaaatgtCTGCACTcgatgcatatatatatatatatttcaaatagaTAATATGAtttgataatatatatacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40118 True 1145 lncRNA 0.28 2 61367275 61383834

Neighbor

gene id symbol gene type direction distance location
LOC103028984 LOC108412120 coding downstream 166052 61169502 ~ 61201223 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding downstream 631424 60731202 ~ 60735851 (-)
xrcc3 xrcc3 coding downstream 665022 60697286 ~ 60702253 (-)
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding downstream 760118 60602410 ~ 60607157 (-)
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding downstream 1055629 60307935 ~ 60311646 (-)
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding upstream 323857 61707691 ~ 61815586 (-)
LOC103031530 NA coding upstream 612519 61996353 ~ 62008626 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding upstream 625973 62009807 ~ 62039839 (-)
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding upstream 662857 62046691 ~ 62057863 (-)
LOC111191939 NA coding upstream 829326 62213160 ~ 62214666 (-)
G29930 NA non-coding downstream 39157 61307103 ~ 61328118 (-)
G29819 NA non-coding downstream 474224 60892696 ~ 60893051 (-)
G29803 NA non-coding downstream 573484 60792776 ~ 60793791 (-)
G29741 NA non-coding downstream 841891 60520240 ~ 60525384 (-)
G29716 NA non-coding downstream 847478 60463976 ~ 60519797 (-)
G30001 NA non-coding upstream 524869 61908703 ~ 61917427 (-)
G30011 NA non-coding upstream 552896 61936730 ~ 61937164 (-)
G30014 NA non-coding upstream 566583 61950417 ~ 61979462 (-)
G30017 NA non-coding upstream 577916 61961750 ~ 61966803 (-)
G30020 NA non-coding upstream 586715 61970549 ~ 61973807 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 2397 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 997661 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 1002531 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 1205209 60149397 ~ 60162066 (-)
snx17 snx17 other downstream 1814365 59506926 ~ 59552910 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 448007 61831841 ~ 61890729 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 1753117 63136951 ~ 63288108 (-)
G30376 NA other upstream 1946210 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 2049958 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 2144447 63528281 ~ 63763673 (-)

Expression


Co-expression Network