G29974


Basic Information

Item Value
gene id G29974
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61906583 ~ 61907066 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40173
aggtgaccctgctgggctgatgtgatgatagcagtggagcgctaaagttcagtagcctagctgctggttaactagttaactttagggcatggTATGTgtacagaaagggggcaggaggtgcagaaattaattaatattgtccattccttaattcctctgtgatggggagctgaaattagctctgattattttttatttgatttattttttccgttccgccttaaatgcggtagcgcctgccgtctgttgcaccatttaaggtggaacaggaaagttagctagctagctagctaccgaaacgaactactagcgaactttttatgcttgttacgaagaattcagccataaaacatcaaaactacacaataaactaaggtaatacagtgctaatcgtaatttttaacatggaaaatactttctttggtcgcttgttccgccatcttgccagtcattctcatacccctcggtACGAAGTGTGGGTCTG

Function

NR:

description
transposase, partial

GO: NA

KEGG:

id description
ko05202 Transcriptional misregulation in cancer

RNA

RNA id representative length rna type GC content exon number start site end site
TU40173 True 484 lncRNA 0.35 1 61906583 61907066

Neighbor

gene id symbol gene type direction distance location
l3hypdh l3hypdh,LOC107684001 coding upstream 201755 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding upstream 209712 61696800 ~ 61696871 (+)
trnad-guc NA coding upstream 213299 61693213 ~ 61693284 (+)
LOC103031412 NA coding upstream 742985 60994927 ~ 61163598 (+)
brf1 brf1,brf1b,LOC107701485,LOC107718407,LOC107683968 coding upstream 1112753 60703082 ~ 60793830 (+)
LOC103031223 NA coding downstream 43405 61950471 ~ 61983459 (+)
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding downstream 77573 61984639 ~ 61990664 (+)
LOC103033766 LOC103033766,LOC108416260 coding downstream 884682 62791748 ~ 62793588 (+)
LOC103034413 NA coding downstream 962045 62869111 ~ 62885298 (+)
LOC103046101 LOC108414576,LOC108416204 coding downstream 981802 62888868 ~ 62907516 (+)
G29972 NA non-coding upstream 3614 61902763 ~ 61902969 (+)
G29921 NA non-coding upstream 522749 61367274 ~ 61383834 (+)
G29916 jag2,jag2b,LOC106571712,LOC107718403 non-coding upstream 596740 61307219 ~ 61309843 (+)
G29825 NA non-coding upstream 976006 60929122 ~ 60930577 (+)
G29812 NA non-coding upstream 1078643 60827737 ~ 60827940 (+)
G29963 NA non-coding downstream 1637 61908703 ~ 61917624 (+)
G29976 NA non-coding downstream 5998 61913064 ~ 61915152 (+)
G29977 NA non-coding downstream 30598 61937664 ~ 61937976 (+)
G30042 NA non-coding downstream 140546 62047612 ~ 62092000 (+)
G30097 NA non-coding downstream 393768 62300834 ~ 62303159 (+)
c3h14orf2 NA other upstream 1381532 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 2308251 59586709 ~ 59598332 (+)
atraid atraid other upstream 2346821 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 2677743 59221266 ~ 59228840 (+)
G29382 NA other upstream 2685547 59220532 ~ 59221036 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other downstream 19014 61926080 ~ 61936083 (+)
LOC103045797 NA other downstream 914677 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 1018952 62926018 ~ 62931133 (+)
G30362 NA other downstream 1428668 63335734 ~ 63345693 (+)
kit kit other downstream 2324178 64231244 ~ 64269695 (+)

Expression


Co-expression Network