G30001


Basic Information

Item Value
gene id G30001
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61908703 ~ 61917427 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40213
ctgttgtagaaaagaaaatgaaaggtgggctactcccacctctcgtccggggtacaacttcccctgcgtgttcgtttgatagagagagtcagacaggtggagtgaagctgaaagcaaaccaagtatttattacaaagtactgaatattcaggagaaccaatacatatAAGACAGTGTTACAGCCGTCTCAGTAAGAGTTCtgaccccctctgatctgactccatgttttatacccaaaatgacgtaagcctgttgatgaggcgttgttaaaatcatctcatgttagcatgcacgTGTTAATACTgaagtttcacgtgtctgactggaccactagtgtttgaccttgactgtattcttccagaatggaacctcatggcactatctgtgtgtgtgcgtcaccccccgctttgaagtagaggttttttagggaggcactcactgaccaaaaggctgctttgatctaatagcctttttgtagcaaattagccccgtaccagtcgaattgatgaccgttagttagggtcatgcagtaaaacaaaatacttcaagcctgagctacatctcatatgttatatgttaatgtgggtTAATCTGTcatataataaagtctgtgttagtcacatgccatatcaaacaatgttttactatatgtgtaaaggatatattgtgattattggttaatcttttatataaatgcgtgtaaaatacactgtgagtaaaaatgatcaaatataatgtgagtattggttaatgcctataaaatacaaggtttcacacaataattatgtaattatagatactaagataagtaatcattattgaaagatatttgtcaatacactcaaggtaaaataaaccgTTACTCTTTACTG
>TU40214
ctgttgtagaaaagaaaatgaaaggtgggctactcccacctctcgtccggggtacaacttcccctgcgtgttcgtttgatagagagagtcagacaggtggagtgaagctgaaagcaaaccaagtatttattacaaagtactgaatattcaggagaaccaatacatatAAGACAGTGTTACAGCCGTCTCAGTAAGAGTTCtgaccccctctgatctgactccatgttttatacccaaaatgacgtaagcctgttgatgaggcgttgttaaaatcatctcatgttagcatgcacgTGTTAATACTgaagtttcacgtgtctgactggaccactagtgtttgaccttgactgtattcttccagaatggaacctcatggcactatctgtgtgtgtgcgtcaccccccgctttgaagtagaggttttttagggaggcactcactgaccaaaaggctgctttgatctaatagcctttttgtagcaaattagccccgtaccagtcgaattgatgaccgttagttagggtcatgcagtaaaacaaaatacttcaagcctgagctacatctcatatgttatatgttaatgtgggtTAATCTGTcatataataaagtctgtgttagtcacatgccatatcaaacaatgttttactatatgtgtaaaggatatattgtgattattggttaatcttttatataaatgcgtgtaaaatacactgtgagtaaaaatgatcaaatataatgtgagtattggttaatgcctataaaatacaaggtttcacacaataattatgtaattatagatactaagataagtaatcattattgaaagatatttgtcaatacactcaaggtaaaataaaccgTTACTCTTTACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40213 True 872 lncRNA 0.31 2 61908703 61917427
TU40214 False 872 lncRNA 0.34 2 61908703 61917427

Neighbor

gene id symbol gene type direction distance location
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding downstream 93117 61707691 ~ 61815586 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding downstream 478424 61369995 ~ 61430279 (-)
LOC103028984 LOC108412120 coding downstream 707480 61169502 ~ 61201223 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding downstream 1172852 60731202 ~ 60735851 (-)
xrcc3 xrcc3 coding downstream 1206450 60697286 ~ 60702253 (-)
LOC103031530 NA coding upstream 78926 61996353 ~ 62008626 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding upstream 92380 62009807 ~ 62039839 (-)
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding upstream 129264 62046691 ~ 62057863 (-)
LOC111191939 NA coding upstream 295733 62213160 ~ 62214666 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding upstream 383720 62301147 ~ 62362260 (-)
G29937 NA non-coding downstream 524869 61367275 ~ 61383834 (-)
G29930 NA non-coding downstream 580585 61307103 ~ 61328118 (-)
G29819 NA non-coding downstream 1015652 60892696 ~ 60893051 (-)
G29803 NA non-coding downstream 1114912 60792776 ~ 60793791 (-)
G29741 NA non-coding downstream 1383319 60520240 ~ 60525384 (-)
G30011 NA non-coding upstream 19303 61936730 ~ 61937164 (-)
G30014 NA non-coding upstream 32990 61950417 ~ 61979462 (-)
G30017 NA non-coding upstream 44323 61961750 ~ 61966803 (-)
G30020 NA non-coding upstream 53122 61970549 ~ 61973807 (-)
G30021 LOC108414863 non-coding upstream 62136 61979563 ~ 61983551 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 17974 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 543825 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 1539089 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 1543959 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 1746637 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 1219524 63136951 ~ 63288108 (-)
G30376 NA other upstream 1412617 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 1516365 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 1610854 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 2857257 64774684 ~ 64799176 (-)

Expression


Co-expression Network