G30017


Basic Information

Item Value
gene id G30017
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61961750 ~ 61966803 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40241
ttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgtaattacatgtgttttaccaaaatgcaaagattttcatcagtggccaaaagagtaaaaattgctcttttcgaacttgtctttaagtccttaatcaatcaaaacaaatttggtcttgatgcaatcttgagaccctgtaggtaaataattatcaaaaaaatcttgacattttaactatttgaggcccataaaccttgatcaaacatgtacgtgaaagccttttcagagttatttggccaaaactctgtcaaagtttaaaacatgccaaaactgttgaagctactaattaacaatgacatttgaagcacatttgccaagtatgagccaaataagtcttcagtaggctctacagtgaaaaaataactattttcaatttattctatttatcgctattttccaacctaaatggacagaagacaggaacctttgaccctatcaacacacaaatttatacacatatatagactgataatctgatcttgattgcaaattttgagccaaatcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40241 True 646 lncRNA 0.41 2 61961750 61966803

Neighbor

gene id symbol gene type direction distance location
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding downstream 146164 61707691 ~ 61815586 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding downstream 531471 61369995 ~ 61430279 (-)
LOC103028984 LOC108412120 coding downstream 760527 61169502 ~ 61201223 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding downstream 1225899 60731202 ~ 60735851 (-)
xrcc3 xrcc3 coding downstream 1259497 60697286 ~ 60702253 (-)
LOC103031530 NA coding upstream 29550 61996353 ~ 62008626 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding upstream 43004 62009807 ~ 62039839 (-)
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding upstream 79888 62046691 ~ 62057863 (-)
LOC111191939 NA coding upstream 246357 62213160 ~ 62214666 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding upstream 334344 62301147 ~ 62362260 (-)
G30011 NA non-coding downstream 24586 61936730 ~ 61937164 (-)
G30001 NA non-coding downstream 44323 61908703 ~ 61917427 (-)
G29937 NA non-coding downstream 577916 61367275 ~ 61383834 (-)
G29930 NA non-coding downstream 633632 61307103 ~ 61328118 (-)
G29819 NA non-coding downstream 1068699 60892696 ~ 60893051 (-)
G30020 NA non-coding upstream 3746 61970549 ~ 61973807 (-)
G30021 LOC108414863 non-coding upstream 12760 61979563 ~ 61983551 (-)
G30047 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 non-coding upstream 17871 61984674 ~ 61990660 (-)
G30058 NA non-coding upstream 143465 62110268 ~ 62110469 (-)
G30066 NA non-coding upstream 211389 62178192 ~ 62178433 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 71021 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 596872 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 1592136 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 1597006 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 1799684 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 1170148 63136951 ~ 63288108 (-)
G30376 NA other upstream 1363241 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 1466989 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 1561478 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 2807881 64774684 ~ 64799176 (-)

Expression


Co-expression Network