G30021 (LOC108414863)


Basic Information

Item Value
gene id G30021
gene name LOC108414863
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 61979563 ~ 61983551 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40249
GACCTCACTGTGTACAAAAATTGTCACATCATCCAGAACTTTGTTCTTCAgcaaaacattgtaaaaaataatttaaaaagtattattaaaagtataaaaacacaaacataaaaacactgctatgcaaaaattaataatacaagtTGCTATAAAACTCTGCATTAGTCATGGTAAACACATAAATTCAATCAACACTGCTGCTTCAGGGTTTGCCCATAGTTAAAGTGTCCTGCCGGAGCATCAGGAGCAGCTGTCTGGTGTGTTCAGTCTGCTGCTGCACTCTGTTCAGCTCCTGCTCCAGATCCACCCTCGTCACCATTCTGCCCAGCCCTCCACCTTTTTTTGAGATTAGACACACTAGAGATAGCAAGCTGCTGAAATCTCACTTCCTGACTGCGAAGGAATCTCATCAAGTATTCCACAATGGCTTTGTGGTGAAGTTTCAGTAGTTCATCATTTATGTCTAATTTGCTGATTAAAGAACCGGCAGCAAAAGACAATTCAACATTTTTGCTTTCACTGGAGATGACCACAAGTCTGCCAATGTGAGTTGTAGTCATTTTCTCGACAAGACCGAATCGGAGAGAGTCATGACAAGCCAGTGAATAGAGGCAAATTAATACACTTAAAACAACGTCATCCTCCTTCCAATGAAACTCAAGAGCCAGAAGAAGCCCAGACAAGCATTCGATCGGCAGCGGGacCTGCAGACTCTCCACAATGTCCCAGAGGTGGTTGAAGGTAACAGTGCAGTGAGTGACTATAGTTGGGTTAGGCAGATGTGTGAGAAGCAGGTCTCCCAAAACAGGAATCACACCCTGATTCACCAGAGACtcTCTCTTTGGTGGGTGGGCAGAAAGCTGAGAGAGCAGCATTAAAGCAGTTTCAGGGGGGGTATGTTCTGGGGCTCTCAGGAGGGTCAACAGTGGGCACACCCAATCCAGCCCAACCAGTTGATTATGTGCCTCACCATTCAAAGTGAGGCTCCTGAGGCACTGACTGGCCTGGGTGGAATTCTTAAGAACAGATGAGCCCATAAGTAAGACCAGGGATTTCAGCAGGAAACGGTCACcaatttggagcatttttgtGTGATGCTCTGGAACTGAACTTCAGAATCAGTTGACTGTAACAGTAGAGCCAGCACAGGTATAATTCCCTCTTTACAAAGCACATCTACCGTATTctCAGATTTGGTAAGATTAAGAAGGGCTCTGACAGCATTTTGTTGAACTTTTGGATCAAAGGCCCGTGCCAGGACAAGCAGAGGCAGCACAGCATCAGAGGCCACAATCACCTCTCTGTTTGAATCTGAAGAGGCTAGCAAAGCAATACATGCACTGGAGTGACATTGAACTGTGTTATCACCAGACTGTAGGAGATCAACCAGTGGCTCCAAAAGCCCCATCTCAATGACATGCTCTTCtttaact
>TU40250
GACCTCACTGTGTACAAAAATTGTCACATCATCCAGAACTTTGTTCTTCAgcaaaacattgtaaaaaataatttaaaaagtattattaaaagtataaaaacacaaacataaaaacactgctatgcaaaaattaataatacaagtTGCTATAAAACTCTGCATTAGTCATGGTAAACACATAAATTCAATCAACACTGCTGCTTCAGGGTTTGCCCATAGTTAAAGTGTCCTGCCGGAGCATCAGGAGCAGCTGTCTGGTGTGTTCAGTCTGCTGCTGCACTCTGTTCAGCTCCTGCTCCAGATCCACCCTCGTCACCATTCTGCCCAGCCCTCCACCTTTTTTTGAGATTAGACACACTAGAGATAGCAAGCTGCTGAAATCTCACTTCCTGACTGCGAAGGAATCTCATCAAGTATTCCACAATGGCTTTGTGGTGAAGTTTCAGTAGTTCATCATTTATGTCTAATTTGCTGATTAAAGAACCGGCAGCAAAAGACAATTCAACATTTTTGCTTTCACTGGAGATGACCACAAGTCTGCCAATGTGAGTTGTAGTCATTTTCTCGACAAGACCGAATCGGAGAGAGTCATGACAAGCCAGTGAATAGAGGCAAATTAATACACTTAAAACAACGTCATCCTCCTTCCAATGAAACTCAAGAGCCAGAAGAAGCCCAGACAAGCATTCGATCGGCAGCGGGacCTGCAGACTCTCCACAATGTCCCAGAGGTGGTTGAAGGTAACAGTGCAGTGAGTGACTATAGTTGGGTTAGGCAGATGTGTGAGAAGCAGGTCTCCCAAAACAGGAATCACACCCTGATTCACCAGAGACtcTCTCTTTGGTGGGTGGGCAGAAAGCTGAGAGAGCAGCATTAAAGCAGTTTCAGGGGGGGTATGTTCTGGGGCTCTCAGGAGGGTCAACAGTGGGCACACCCAATCCAGCCCAACCAGTTGATTATGTGCCTCACCATTCAAAGTGAGGCTCCTGAGGCACTGACTGGCCTGGGTGGAATTCTTAAGAACAGATGAGCCCATAAGTAAGACCAGGGATTTCAGCAGGAAACGGTCACcaatttggagcatttttgtGTGATGCTCTGGAACTGCAGCAATATTACTCAATGCATAGCAGCTGC

Function

NR:

description
PREDICTED: vacuolar protein 8-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40249 True 1433 lncRNA 0.44 11 61979563 61983551
TU40250 False 1138 lncRNA 0.44 8 61980741 61983551

Neighbor

gene id symbol gene type direction distance location
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding downstream 163977 61707691 ~ 61815586 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding downstream 549284 61369995 ~ 61430279 (-)
LOC103028984 LOC108412120 coding downstream 778340 61169502 ~ 61201223 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding downstream 1243712 60731202 ~ 60735851 (-)
xrcc3 xrcc3 coding downstream 1277310 60697286 ~ 60702253 (-)
LOC103031530 NA coding upstream 12802 61996353 ~ 62008626 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding upstream 26256 62009807 ~ 62039839 (-)
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding upstream 63140 62046691 ~ 62057863 (-)
LOC111191939 NA coding upstream 229609 62213160 ~ 62214666 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding upstream 317596 62301147 ~ 62362260 (-)
G30014 NA non-coding downstream 101 61950417 ~ 61979462 (-)
G30020 NA non-coding downstream 5756 61970549 ~ 61973807 (-)
G30017 NA non-coding downstream 12760 61961750 ~ 61966803 (-)
G30011 NA non-coding downstream 42399 61936730 ~ 61937164 (-)
G30001 NA non-coding downstream 62136 61908703 ~ 61917427 (-)
G30047 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 non-coding upstream 1123 61984674 ~ 61990660 (-)
G30058 NA non-coding upstream 126717 62110268 ~ 62110469 (-)
G30066 NA non-coding upstream 194641 62178192 ~ 62178433 (-)
G30083 NA non-coding upstream 249377 62232928 ~ 62236594 (-)
G30081 NA non-coding upstream 250267 62233818 ~ 62235787 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 88834 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 614685 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 1609949 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 1614819 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 1817497 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 1153400 63136951 ~ 63288108 (-)
G30376 NA other upstream 1346493 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 1450241 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 1544730 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 2791133 64774684 ~ 64799176 (-)

Expression


Co-expression Network