G30083


Basic Information

Item Value
gene id G30083
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62232928 ~ 62236594 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40322
ATTGTCacatcttttgcctgttttctgtCTATTCTCATGTCTGTTATTCTCACGTGACCCggcttctctgtgtttctcccctggtgtttttccactcacctgtgtccatttgtagctccgcccctcattagtcagtccccaggtgttacctgttctctttcccgccttgtgtgtgtatttaagcgtctctgtcattagtgtttttgtcggttcttgtgcgtttgtacgtctgtcacggctgtgtaTATCCCGTCTGTTATTTAGTCTCCCGGTCTCtgagtttctgtttggtttatgttttgttttctgttctataataaatgttacttgcattagcgtccgctctcctcgtcccgtcCTTCACACTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40322 True 371 lncRNA 0.39 2 62232928 62236594

Neighbor

gene id symbol gene type direction distance location
LOC111191939 NA coding downstream 18262 62213160 ~ 62214666 (-)
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding downstream 175065 62046691 ~ 62057863 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding downstream 193089 62009807 ~ 62039839 (-)
LOC103031530 NA coding downstream 224302 61996353 ~ 62008626 (-)
LOC103042845 daam1b,LOC108412077,LOC107755211,LOC108257948,LOC107701451 coding downstream 417342 61707691 ~ 61815586 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding upstream 64553 62301147 ~ 62362260 (-)
LOC103034091 NA coding upstream 562025 62798619 ~ 62817748 (-)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 coding upstream 706479 62943073 ~ 62962918 (-)
LOC103046711 LOC108414824 coding upstream 742718 62979312 ~ 63007981 (-)
trappc8 trappc8 coding upstream 777644 63014238 ~ 63065232 (-)
G30066 NA non-coding downstream 54495 62178192 ~ 62178433 (-)
G30058 NA non-coding downstream 122459 62110268 ~ 62110469 (-)
G30047 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 non-coding downstream 242268 61984674 ~ 61990660 (-)
G30021 LOC108414863 non-coding downstream 249377 61979563 ~ 61983551 (-)
G30020 NA non-coding downstream 259121 61970549 ~ 61973807 (-)
G30093 NA non-coding upstream 23528 62260122 ~ 62260326 (-)
G30150 NA non-coding upstream 481699 62718293 ~ 62751535 (-)
G30141 NA non-coding upstream 500613 62737207 ~ 62744288 (-)
G30196 NA non-coding upstream 602540 62839134 ~ 62843134 (-)
G30229 NA non-coding upstream 690320 62926914 ~ 62929726 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 342199 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 868050 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 1863314 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 1868184 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 2070862 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 900357 63136951 ~ 63288108 (-)
G30376 NA other upstream 1093450 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 1197198 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 1291687 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 2538090 64774684 ~ 64799176 (-)

Expression


Co-expression Network