G30097


Basic Information

Item Value
gene id G30097
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62300834 ~ 62303159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40338
TCCAAAATTAGACTTTTATTGGCCAGTTGGGCTGCGATGGTCATAACATCCACATATAACGGCAAACATAGCCCACAGAAACCCGGCGGCTGCCAGCTATCTGACAGCTGTCACTCAACCATCCTACTGTCAGTCACCTGAGTGTGAACTGGAGAACTACACACGGTCTGCTCTTTAGACTAGCACTGCTTGGCCCTTCTGTGACAGCCTGGAatgcatgtacacacacacacacacgcacgcacacgcacacacacacacacacacacacacacacatcctctgATGCGGAGAGACAGCACTAGGGATTAGGGCACTGCTAAAACTTCAGTAACGGGCTCTGCTCTTCAGTCCATCTCTGGTGTGCTCCAGTAGAGCTGTGAGCAGTGAGCAGAGCGCACTCCGAAGCCTCCAGCCTTCTGTCCGTAAGAGTAGCCTGTGGAGTGTAGCAGTGGGGATGGCCTCGGTAATGCTGGAAGGAGGGAGGTTGGGGTTAAGCCAGGAGAAAAGATTTTTCGAGCTGGGCGGGCGCACTGGGGCAAGAGCAACCAGAGGCTATTAGAAGAGACCAGGGGGAAAAGCTGCAATTAATTTATGTGGGGAGGAGGGAGAAGAAGTTACTACAAGAAAAACTGCTGTCTCTCCGGTGCCGTGTCTTTCCAGAGTtggagccttttttttttcctgggtaaataaattttggaatttttttataccgaaaagataaaaacatgcaaaaagccTTTCATTTGTAGTATACAAGTTTCATACTCCTTGTACTTCTTCATTGTCTACATCaacaaaaaggggaaaaaaataaaactgtacacaccatttaatttacagtagagttaaaaaacagaaataataccATAGGGTGACTAAGGCAGATGGAGCTTTAACAAAAGAAACCaattttatttgtgtaaaacaATGTCACATAAAAAAGGGAAAtcaaactaactaaaaaaatcTGCTAGAAAACAACGATAGGGGTTTCTCCCCTGCGCTTCACACCGGCTGCATAAATTAAACTTTTGGTGGAAAACgatgaataatataaaaaaacacaaaagaaaaaacaatgacaTGGAAatcaaaaatctaaatttctAGTGTACTGTACAATGCTGTTCTCTCGGTCTCATCTTCGGCTTGGCTGCGGTACGTGACGGGGTGGAACAGCGTGATGGCGTACAAACAGAAGCGTGTAGAAGCATAACCGTATTCTATAAACAGGCTCACAACAGAACCACTCAAAAAACTCAGAGCCAGTAAAGCCAATGAAACCAAGTATTCAGATCTGAAGTAAAAAGcaggaataaaacaacaaaaatgtacaaaaaggcACGTAATATCCCAGTGCTTCTGTACTGTGAAATTCAAGTGTAACTGAGCGTTCGCTTCAACGTTCTTGTAGTGTTCcttcagtgtttgtttttttttttttttttcttaatgtttcAATTATCGCACCAATGGGTCCCTCActcaggcaaaaaaaataactggTCAGATCCAGAGCTAGTCCAGATTCCTTCAGCTGGCTCTTTTTCGCTCCAGCAGAAAACCTGGGAAAGAGCCAGTTTTGTTGCCATGGTGATCCTCCTTCCTCTCGCTCATCCTCTCCTGGGGGAACATCGCTTTCTTCATTCTTCTGATTTTACACCCTGTCCATGTCCCATGATAAAAAAGTGccactcttctttttttttaatatatattttatttagattttttttgttgcacctCTTCCTCCAGTGGTCTTGGGACATCTCTGGGCTGAGGGGGGACGGGGGGGTTAGGGCTGGCTAGTCGTCGTTTCCTCCATACATGTCGGCCAGCTTGCGAAAGCGTGGTCCCCAGTCGTTGAGGTAGTCATAGTCCTGGTCTCCCCCGGAGCTGGAGGAGTGCAGGGAGCTGAGCGAGCCGGCCGTGGAGCCGCTGCCCTCGTAGTCGAACACCAACAGGGAGTCGTATGGGGGAGCTGTGGGGTCTGTATCCGCTGCC
>TU40343
TCCAAAATTAGACTTTTATTGGCCAGTTGGGCTGCGATGGTCATAACATCCACATATAACGGCAAACATAGCCCACAGAAACCCGGCGGCTGCCAGCTATCTGACAGCTGTCACTCAACCATCCTACTGTCAGTCACCTGAGTGTGAACTGGAGAACTACACACGGTCTGCTCTTTAGACTAGCACTGCTTGGCCCTTCTGTGACAGCCTGGAatgcatgtacacacacacacacacgcacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatcctctgATGCGGAGAGACAGCACTAGGGATTAGGGCACTGCTAAAACTTCAGTAACGGGCTCTGCTCTTCAGTCCATCTCTGGTGTGCTCCAGTAGAGCTGTGAGCAGTGAGCAGAGCGCACTCCGAAGCCTCCAGCCTTCTGTCCGTAAGAGTAGCCTGTGGAGTGTAGCAGTGGGGATGGCCTCGGTAATGCTGGAAGGAGGGAGGTTGGGGTTAAGCCAGGAGAAAAGATTTTTCGAGCTGGGCGGGCGCACTGGGGCAAGAGCAACCAGAGGCTATTAGAAGAGACCAGGGGGAAAAGCTGCAATTAATTTATGTGGGGAGGAGGGAGAAGAAGTTACTACAAGAAAAACTGCTGTCTCTCCGGTGCCGTGTCTTTCCAGAGTtggagccttttttttttcctgggtaaataaattttggaatttttttataccgaaaagataaaaacatgcaaaaagccTTTCATTTGTAGTATACAAGTTTCATACTCCTTGTACTTCTTCATTGTCTACATCaacaaaaaggggaaaaaaataaaactgtacacaccatttaatttacagtagagttaaaaaacagaaataataccATAGGGTGACTAAGGCAGATGGAGCTTTAACAAAAGAAACCaattttatttgtgtaaaacaATGTCACATAAAAAAGGGAAAtcaaactaactaaaaaaatcTGCTAGAAAACAACGATAGGGGTTTCTCCCCTGCGCTTCACACCGGCTGCATAAATTAAACTTTTGGTGGAAAACgatgaataatataaaaaaacacaaaagaaaaaacaatgacaTGGAAatcaaaaatctaaatttctAGTGTACTGTACAATGCTGTTCTCTCGGTCTCATCTTCGGCTTGGCTGCGGTACGTGACGGGGTGGAACAGCGTGATGGCGTACAAACAGAAGCGTGTAGAAGCATAACCGTATTCTATAAACAGGCTCACAACAGAACCACTCAAAAAACTCAGAGCCAGTAAAGCCAATGAAACCAAGTATTCAGATCTGAAGTAAAAAGcaggaataaaacaacaaaaatgtacaaaaaggcACGTAATATCCCAGTGCTTCTGTACTGTGAAATTCAAGTGTAACTGAGCGTTCGCTTCAACGTTCTTGTAGTGTTCcttcagtgtttgtttttttttttttttttcttaatgtttcAATTATCGCACCAATGGGTCCCTCActcaggcaaaaaaaataactggTCAGATCCAGAGCTAGTCCAGATTCCTTCAGCTGGCTCTTTTTCGCTCCAGCAGAAAACCTGGGAAAGAGCCAGTTTTGTTGCCATGGTGATCCTCCTTCCTCTCGCTCATCCTCTCCTGGGGGAACATCGCTTTCTTCATTCTTCTGATTTTACACCCTGTCCATGTCCCATGATAAAAAAGTGccactcttctttttttttaatatatattttatttagattttttttgttgcacctCTTCCTCCAGTGGTCTTGGGACATCTCTGGGCTGAGGGGGGACGGGGGGGTTAGGGCTGGCTAGTCGTCGTTTCCTCCATACATGTCGGCCAGCTTGCGAAAGCGTGGTCCCCAGTCGTTGAGGTAGTCATAGTCCTGGTCTCCCCCGGAGCTGGAGGAGTGCAGGGAGCTGAGCGAGCCGGCCGTGGAGCCGCTGCCCTCGTAGTCGAACACCAACAGGGAGTCGTATGGGGGAGCTGTGGGGTCTGTATCCGCTGCC
>TU40344
TCCAAAATTAGACTTTTATTGGCCAGTTGGGCTGCGATGGTCATAACATCCACATATAACGGCAAACATAGCCCACAGAAACCCGGCGGCTGCCAGCTATCTGACAGCTGTCACTCAACCATCCTACTGTCAGTCACCTGAGTGTGAACTGGAGAACTACACACGGTCTGCTCTTTAGACTAGCACTGCTTGGCCCTTCTGTGACAGCCTGGAatgcatgtacacacacacacacacgcacgcacacgcacacacacacacacacacacacacacacacacacacacatcctctgATGCGGAGAGACAGCACTAGGGATTAGGGCACTGCTAAAACTTCAGTAACGGGCTCTGCTCTTCAGTCCATCTCTGGTGTGCTCCAGTAGAGCTGTGAGCAGTGAGCAGAGCGCACTCCGAAGCCTCCAGCCTTCTGTCCGTAAGAGTAGCCTGTGGAGTGTAGCAGTGGGGATGGCCTCGGTAATGCTGGAAGGAGGGAGGTTGGGGTTAAGCCAGGAGAAAAGATTTTTCGAGCTGGGCGGGCGCACTGGGGCAAGAGCAACCAGAGGCTATTAGAAGAGACCAGGGGGAAAAGCTGCAATTAATTTATGTGGGGAGGAGGGAGAAGAAGTTACTACAAGAAAAACTGCTGTCTCTCCGGTGCCGTGTCTTTCCAGAGTtggagccttttttttttcctgggtaaataaattttggaatttttttataccgaaaagataaaaacatgcaaaaagccTTTCATTTGTAGTATACAAGTTTCATACTCCTTGTACTTCTTCATTGTCTACATCaacaaaaaggggaaaaaaataaaactgtacacaccatttaatttacagtagagttaaaaaacagaaataataccATAGGGTGACTAAGGCAGATGGAGCTTTAACAAAAGAAACCaattttatttgtgtaaaacaATGTCACATAAAAAAGGGAAAtcaaactaactaaaaaaatcTGCTAGAAAACAACGATAGGGGTTTCTCCCCTGCGCTTCACACCGGCTGCATAAATTAAACTTTTGGTGGAAAACgatgaataatataaaaaaacacaaaagaaaaaacaatgacaTGGAAatcaaaaatctaaatttctAGTGTACTGTACAATGCTGTTCTCTCGGTCTCATCTTCGGCTTGGCTGCGGTACGTGACGGGGTGGAACAGCGTGATGGCGTACAAACAGAAGCGTGTAGAAGCATAACCGTATTCTATAAACAGGCTCACAACAGAACCACTCAAAAAACTCAGAGCCAGTAAAGCCAATGAAACCAAGTATTCAGATCTGAAGTAAAAAGcaggaataaaacaacaaaaatgtacaaaaaggcACGTAATATCCCAGTGCTTCTGTACTGTGAAATTCAAGTGTAACTGAGCGTTCGCTTCAACGTTCTTGTAGTGTTCcttcagtgtttgtttttttttttttttttcttaatgtttcAATTATCGCACCAATGGGTCCCTCActcaggcaaaaaaaataactggTCAGATCCAGAGCTAGTCCAGATTCCTTCAGCTGGCTCTTTTTCGCTCCAGCAGAAAACCTGGGAAAGAGCCAGTTTTGTTGCCATGGTGATCCTCCTTCCTCTCGCTCATCCTCTCCTGGGGGAACATCGCTTTCTTCATTCTTCTGATTTTACACCCTGTCCATGTCCCATGATAAAAAAGTGccactcttctttttttttaatatatattttatttagattttttttgttgcacctCTTCCTCCAGTGGTCTTGGGACATCTCTGGGCTGAGGGGGGACGGGGGGGTTAGGGCTGGCTAGTCGTCGTTTCCTCCATACATGTCGGCCAGCTTGCGAAAGCGTGGTCCCCAGTCGTTGAGGTAGTCATAGTCCTGGTCTCCCCCGGAGCTGGAGGAGTGCAGGGAGCTGAGCGAGCCGGCCGTGGAGCCGCTGCCCTCGTAGTCGAACACCAACAGGGAGTCGTATGGGGGAGCTGTGGGGTCTGTATCCGCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40338 False 2010 lncRNA 0.43 2 62300834 62303159
TU40343 True 2046 lncRNA 0.45 2 62300834 62303159
TU40344 False 2020 lncRNA 0.35 2 62300834 62303159

Neighbor

gene id symbol gene type direction distance location
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding upstream 310170 61984639 ~ 61990664 (+)
LOC103031223 NA coding upstream 317375 61950471 ~ 61983459 (+)
l3hypdh l3hypdh,LOC107684001 coding upstream 596006 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding upstream 603963 61696800 ~ 61696871 (+)
trnad-guc NA coding upstream 607550 61693213 ~ 61693284 (+)
LOC103033766 LOC103033766,LOC108416260 coding downstream 488589 62791748 ~ 62793588 (+)
LOC103034413 NA coding downstream 565952 62869111 ~ 62885298 (+)
LOC103046101 LOC108414576,LOC108416204 coding downstream 585709 62888868 ~ 62907516 (+)
LOC103046397 NA coding downstream 605932 62909091 ~ 62925805 (+)
ttr ttr coding downstream 632526 62935685 ~ 62940874 (+)
G30042 NA non-coding upstream 208834 62047612 ~ 62092000 (+)
G29977 NA non-coding upstream 362858 61937664 ~ 61937976 (+)
G29963 NA non-coding upstream 383210 61908703 ~ 61917624 (+)
G29976 NA non-coding upstream 385682 61913064 ~ 61915152 (+)
G29974 NA non-coding upstream 393768 61906583 ~ 61907066 (+)
G30105 LOC108416271 non-coding downstream 21358 62324517 ~ 62356704 (+)
G30110 NA non-coding downstream 91761 62394920 ~ 62395161 (+)
G30122 NA non-coding downstream 258719 62561878 ~ 62562080 (+)
G30125 NA non-coding downstream 284564 62587723 ~ 62588056 (+)
G30130 NA non-coding downstream 346205 62649364 ~ 62651937 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 364751 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 1775783 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 2702502 59586709 ~ 59598332 (+)
atraid atraid other upstream 2741072 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 3071994 59221266 ~ 59228840 (+)
LOC103045797 NA other downstream 518584 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 622859 62926018 ~ 62931133 (+)
G30362 NA other downstream 1032575 63335734 ~ 63345693 (+)
kit kit other downstream 1928085 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 2719260 65022419 ~ 65046978 (+)

Expression


Co-expression Network