G30122


Basic Information

Item Value
gene id G30122
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62561878 ~ 62562080 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40383
cgagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtatgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggctgaacaaatcacggcagaattca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40383 True 203 lncRNA 0.41 1 62561878 62562080

Neighbor

gene id symbol gene type direction distance location
LOC103029839 psma8,LOC103029839,LOC107572146,LOC100304914,LOC107723426 coding upstream 571214 61984639 ~ 61990664 (+)
LOC103031223 NA coding upstream 578419 61950471 ~ 61983459 (+)
l3hypdh l3hypdh,LOC107684001 coding upstream 857050 61693955 ~ 61704828 (+)
trnad-guc_1 NA coding upstream 865007 61696800 ~ 61696871 (+)
trnad-guc NA coding upstream 868594 61693213 ~ 61693284 (+)
LOC103033766 LOC103033766,LOC108416260 coding downstream 229668 62791748 ~ 62793588 (+)
LOC103034413 NA coding downstream 307031 62869111 ~ 62885298 (+)
LOC103046101 LOC108414576,LOC108416204 coding downstream 326788 62888868 ~ 62907516 (+)
LOC103046397 NA coding downstream 347011 62909091 ~ 62925805 (+)
ttr ttr coding downstream 373605 62935685 ~ 62940874 (+)
G30110 NA non-coding upstream 166717 62394920 ~ 62395161 (+)
G30105 LOC108416271 non-coding upstream 205174 62324517 ~ 62356704 (+)
G30097 NA non-coding upstream 258719 62300834 ~ 62303159 (+)
G30042 NA non-coding upstream 469878 62047612 ~ 62092000 (+)
G29977 NA non-coding upstream 623902 61937664 ~ 61937976 (+)
G30125 NA non-coding downstream 25643 62587723 ~ 62588056 (+)
G30130 NA non-coding downstream 87284 62649364 ~ 62651937 (+)
G30138 NA non-coding downstream 175487 62737567 ~ 62738912 (+)
G30168 NA non-coding downstream 241511 62803591 ~ 62804754 (+)
G30280 NA non-coding downstream 554782 63116862 ~ 63117415 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 625795 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2036827 60520342 ~ 60525051 (+)
nme6 nme6 other upstream 2963546 59586709 ~ 59598332 (+)
atraid atraid other upstream 3002116 59554285 ~ 59559762 (+)
LOC111194375 NA other upstream 3333038 59221266 ~ 59228840 (+)
LOC103045797 NA other downstream 259663 62821743 ~ 62853288 (+)
LOC103035278 NA other downstream 363938 62926018 ~ 62931133 (+)
G30362 NA other downstream 773654 63335734 ~ 63345693 (+)
kit kit other downstream 1669164 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 2460339 65022419 ~ 65046978 (+)

Expression


Co-expression Network