G30229


Basic Information

Item Value
gene id G30229
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62926914 ~ 62929726 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40512
TTCTTTTTTTGACTTGAGGCTGGTCAATTTATATTCTTCTCCAGTATGAATTGCATCACTGTCCACTGCCAAACTGATGTCTTCTAACCAGTTGACACCcacattagatagatagatagatagatactttatttatcccgaaggaaatttaggaacaaGAACCATTGACCATTGGTGTGTCCTGTGGTATCTCTATGCCTGTATGCCTCTATGCCTCTATCTCTATGCCTGAATGAAGTCCATGTCCAACAATAAGATGTTAATGAGTATCTTGTTTTGGTCTTTCAACATTTACAATTAAATCCCCAACATCTTCCTTTGAGTTAAAAGCTGCATCTTCCTGATTTGAGTCAGAAGCTTCATCTTACTTATTTGAGTCAGAAGCTACATCCTCCTTTGCGTCAGAAGCTACATCTTCTTTTGAGTCAGAAGCTACATCTTCCTTTGAGTCACAAGCTACATCTTCCTGATTTGAGTCAGAAGCTTCATCTTCCTGATTTGAGTCAGAAGCTGCATCTTCCTTTGAGTCAGAAGCTGCATCTTCCTTTGAGTCAGAAGCT

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40512 True 560 lncRNA 0.39 2 62926914 62929726

Neighbor

gene id symbol gene type direction distance location
LOC103034091 NA coding downstream 109166 62798619 ~ 62817748 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding downstream 564654 62301147 ~ 62362260 (-)
LOC111191939 NA coding downstream 712248 62213160 ~ 62214666 (-)
LOC103030167 LOC108414838,LOC107684806,LOC107723431 coding downstream 869051 62046691 ~ 62057863 (-)
LOC103031849 kctd1,LOC108414594,LOC103031849,LOC108442723,LOC106599692,LOC107723550,LOC107561046,LOC107684804,LOC107746021,LOC107701518 coding downstream 887075 62009807 ~ 62039839 (-)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 coding upstream 13347 62943073 ~ 62962918 (-)
LOC103046711 LOC108414824 coding upstream 49586 62979312 ~ 63007981 (-)
trappc8 trappc8 coding upstream 84512 63014238 ~ 63065232 (-)
LOC103038514 LOC108414611 coding upstream 184364 63114090 ~ 63119496 (-)
lrrc66 NA coding upstream 406124 63335850 ~ 63356289 (-)
G30196 NA non-coding downstream 83780 62839134 ~ 62843134 (-)
G30150 NA non-coding downstream 175379 62718293 ~ 62751535 (-)
G30141 NA non-coding downstream 182626 62737207 ~ 62744288 (-)
G30093 NA non-coding downstream 666588 62260122 ~ 62260326 (-)
G30083 NA non-coding downstream 690320 62232928 ~ 62236594 (-)
G30231 NA non-coding upstream 1392 62931118 ~ 62931764 (-)
G30247 NA non-coding upstream 36723 62966449 ~ 62967328 (-)
G30288 NA non-coding upstream 87973 63017699 ~ 63018729 (-)
G30291 anapc4,LOC107683992,LOC107665412 non-coding upstream 136803 63066529 ~ 63069341 (-)
G30296 NA non-coding upstream 154601 63084327 ~ 63086956 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 1036185 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 1562036 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 2557300 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 2562170 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 2764848 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 207225 63136951 ~ 63288108 (-)
G30376 NA other upstream 400318 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 504066 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 598555 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 1844958 64774684 ~ 64799176 (-)

Expression


Co-expression Network