G30341


Basic Information

Item Value
gene id G30341
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63154931 ~ 63157654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40668
GCTTAGAAAGCTTTATTTAGAAATGCATCTCTTCAACAATTGACGTGCACAGTTTGTGTGTGGTTGGATTCCTGTTCTCATGAACTTTCAGTGACCAGGCATTTCAACCGGAATGCAAGACTTTCTTCTCACAGGTTGAAGATGATTACCGTGCATGTACATCACTGCTGACTTCATCAGGGAAAGTGGAATCGCATCATATTTCCTCGTGTCATTCACTGTAAAAAGGCCCCTCCCCTTTCTACTAGTTATACATATGAATGATTCTCTGAAAACCCGGCAGTTCTTAACAGTTCTGAGTCGTACCTCAAGATCAGCTCAAGGACATCTGCTCCTGTCGTTCCCCAGCTCTTAGTGTAATGAGTCCAGATAAAACCATCAATACTCTTACTCATCAACTCCTCCACCATAGCCATTCCCCTTAAAAGCTTTCCGTAATTCTGCTCCTGATTTGGCAGCTTGCCACAGTCCTCAGCGTTGAAGCTCTAGACTCTTAAACAGGAGGGAGGATGGAAGGGAACGGCAGGAACTCGCTCACtttgttatatattgttttctttCTATTCCAGTGACGTCTTTGTCAACTTCCAGGTCATGCTCTGCATTCTCCCACAGCAGCACTTTTGCTGTCACTCATTTTGTTTGGGGTGAGAAATAACATGCCATTCATCTTTGGCTTGTTACAGTCTCAAGCTCATATTCTGTGTCTACGTTGTGATGGTAGGCGAACGATGGTTTATTATATGATATTTAGTTGCACGGCAGCAACATATTATTGTACATACAATTTATGTAGAGACAGCATTAAAGAGTATACTGGGTATACTCttatttatgtacagtaataCTAAGATGTATGACCGTTCCAATACAATATTGGTATCGGGGCtgatattaatgtaatttaccATATCGAATATCGGGTGACCGCGGCCGATTCAcctaccgatccatattccagtccgcAGCTTGCAATAAACCCAATAAAATATGTCAATTGTCTGGAGAGTTTTCACTTTGGAAACGCTGAACAGCAGGACGGCtacatgaaaaatgtaatatgtaattgTTTCAAAATtctgaaccatctagaaaagtgtttcacactgcagatgaaCCGGACCATGTTTCAGTAGATCCGGGCCGAGACCACCTCTTTGATCAGACTAAACTCTGGTCCTAGGGTCTGGACTGTGGTTTACACCCCCTTTCACTCCAGCtactttggtttggaccaaacttaaaaaaaaatcagaaagttCAGACCAAACAGGGCGGATGTGAaagaattatattatattattatatttttgtataaaaaggCCTTATTTTTCCATTAATGCCAGTCATTGTGAAAGATTGCATAATACCCCACCCCTCTGGGTAGACACAAAATTTTGATTCGTTAGTGTCAGATACGAATCTTGaatattaaaatcatgatgTTTTCCCAATGTGGCGGAAATTGAACTGGGTCCTAGAACTAGAGGAATGCttctaattatatattaaatattacattacttacatttttttcaaatgtttttagaattttccaatatattaatttataaatcatattaattttataaattaattttataaaacatcATAAACAAATCTGCATACAGTCATGAAGATTTTATAATTGTGTtgtaagattaaaaaaaaaacaccctcatgctttttattaatgtttaagaTTCTTAGACCTGTTGTATTTCAGCAAGCTCTATGTGTGAGCGGCTTGTTATGAGTGAGTCGAGGCATGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40668 True 1776 lncRNA 0.38 2 63154931 63157654

Neighbor

gene id symbol gene type direction distance location
LOC103038514 LOC108414611 coding downstream 35435 63114090 ~ 63119496 (-)
trappc8 trappc8 coding downstream 89699 63014238 ~ 63065232 (-)
LOC103046711 LOC108414824 coding downstream 146950 62979312 ~ 63007981 (-)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 coding downstream 192013 62943073 ~ 62962918 (-)
LOC103034091 NA coding downstream 337183 62798619 ~ 62817748 (-)
lrrc66 NA coding upstream 178196 63335850 ~ 63356289 (-)
sgcb sgcb,LOC107597442,LOC107665396,LOC107718388,LOC107601954,LOC107683993,LOC107755229 coding upstream 200257 63357911 ~ 63364411 (-)
lnx1 lnx1,LOC107683953,LOC107665364 coding upstream 666218 63823872 ~ 63907665 (-)
kdr kdr coding upstream 1178059 64335713 ~ 64370564 (-)
clock clock,clocka coding upstream 1269450 64427104 ~ 64500676 (-)
G30286 NA non-coding downstream 20197 63125514 ~ 63134734 (-)
G30296 NA non-coding downstream 67975 63084327 ~ 63086956 (-)
G30291 anapc4,LOC107683992,LOC107665412 non-coding downstream 85590 63066529 ~ 63069341 (-)
G30288 NA non-coding downstream 136202 63017699 ~ 63018729 (-)
G30247 NA non-coding downstream 187603 62966449 ~ 62967328 (-)
G30348 NA non-coding upstream 134365 63292019 ~ 63295723 (-)
G30354 ociad2 non-coding upstream 150340 63307994 ~ 63313055 (-)
G30410 NA non-coding upstream 290236 63447890 ~ 63448572 (-)
G30408 NA non-coding upstream 308666 63466320 ~ 63468751 (-)
G30412 NA non-coding upstream 351573 63509227 ~ 63509431 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 1264202 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 1790053 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 2785317 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 2790187 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 2992865 60149397 ~ 60162066 (-)
G30376 NA other upstream 172390 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 276138 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 370627 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 1617030 64774684 ~ 64799176 (-)
trnad-guc_7 NA other upstream 1935424 65093078 ~ 65093149 (-)

Expression


Co-expression Network