G30383


Basic Information

Item Value
gene id G30383
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63433831 ~ 63435982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40763
ACCACTGTCCAGTCTACATAATAAATCCATTTTACAGCCTTAGAATTCCAGCTCCTTttgagtttaaaaatatataatttctttCTATCAGACATTCTACACATTTTTTATGTACAGTTGCATCTCACacaaataaaagttatttttttcttccatgtTCCAGTTTTCGaggagtgtgtattgtgtgtgtgtgtgtgtatgtgtgtgtgtatgtgtgtgtgtgtgtgtttgcagagaTTTGGCACAAAGTCAGACTTGTGTTTGATCAGTAACATCGAGAGCAGCACACGTTTAGAGCTACAGGAGATGAGGTTTCAGTACCATGATGAGAAGGTATCACATGGAAgtgtatacactacacacactctcttacttcacactcacactgacaaacaaacacagaacaaaGAAAAATTCTTGACAGCTGACTCCCTGCTTTGGGATGTATTTAATCAAAAAGTTTATGTGTATATgtccgccaaaaaaaaaaggggtaaTTTCTGCATAGTCCTTTTAAGCTTCTGTTATTCCACAGTGACGACATAACTGTAGTGCAGGGATGAGCGCTGCATAACTTTTTGAAATTACTATGCCATAAACATGTCATTACAGGACGGTTACGCCCCTTCCCAACATATTAGCTCATTTCAAATACAGTAAGTGTCTTGTTAACCTTACCAGTAAGTGTCTTGACTGATGTTAGCtaatgcactaaatatgctgcTAGTTTTGCGGTATATTTATGTTGTTTCAGTACTTTAAttgttgtaatatttttattttataaaaattcagTCTTGGAAAGTGTTTACTAAACGGCccaatatttttagattttcgTTGTGTCTACTGAATGTataaaattgtaatagTATTTTCTAGAAATTCTGTTTAAAACATCCaatgtttttttcaaatcaCTAAGAATATCATTATAGCAAACATACCTcgccatattgtgataatactTTAGGGCCACATTACCCACTCCTACTCCATATTTTCCTATCTGGAAAGCCATTTCCCTAAACAAAATgggtttaaaaatagacatttatttaaaCCATTCAACAAGAATTGAATAAGGGGTGATTtactttactattattataggGTTTATCTTACACAAACAAGACATTTTAGTGCTGTTATTAGAGAAAGAAAGCCATTTGAAAGCCATGGggattttacataaaacatgcCTTCTGTCTCGAGATTTATGGTAATGTTCATTACAGCTTCCATGATTCCATGTTGGACAAAGCTGTCCATCACAGGAGAGCTTTTTCTAattctattttcattttatacCTGTATCTGCAAACAAAGTGGAAATACTGATTCTAAACTTCTGAACAGTATTAGATCAGTATGACTAGAATATCTAACTGGAGAAAAAGGGGCTGCAAACTAACAAGCAGATTTGTGTGTGAACTCGTGTGCCATGTCACTTGCCATATACTGTACAATTCAAAGTGTCAAACCGGGCTAAATGGATCACAGCTTGAGCTGTGGGAATAGTGTTAATAAGGGTTGTTTTCTGAGAGCAACTTCAGGTTGAGcagaatgctgggaaaaaaatatagagTACAAGAAACTAAGGAGCATCTTTGATCTGCTGTAAAGTCTGACTGCTCTAGCCTGTCGGTGCAGAAGTTTGATTTCTTCACTAGAAGTGCACTCTCTGTGCTCTGTGGATCCCAAAGAGAACATTGATAAGCtatattaaaacaaagttttagGGTCTTGTTCTCACATTACTGGTTTGCTGTAGGTCAAGACTTCAGTAAAAACACTGGAAATGTAACATTGACCCATTTTCTCTATAACCCAGAACATTACAATGGAAATGGTACTTTTTATAACTCTACGGCTTATGATTAGCGAATTCCAGGATCAAGACTCTTTATTTGAAGGCTACCTACATAGGGACTGCATAAATATCTATAAATGAATACTTCTTTTCTCTATACTCTACTCAGTGAGTGGGGAATTTACCTAATGTGTAACCTTAGATTTATCATCTTTCTGTAATTACTGGAATAAATCGACaaccatttttctttattattgttgttgaaTGCATGTGCTATGTGGCCCCTATGTTAGTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40763 True 2114 lncRNA 0.35 2 63433831 63435982

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107601933,LOC107755228 coding upstream 54309 63365674 ~ 63379522 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 98963 63318652 ~ 63334868 (+)
ociad2 ociad2 coding upstream 118874 63307949 ~ 63314957 (+)
ociad1 NA coding upstream 138108 63290134 ~ 63295723 (+)
zar1 zar1 coding upstream 299094 63132960 ~ 63134737 (+)
rasl11b rasl11b,LOC107718428,LOC107601936 coding downstream 85563 63521545 ~ 63524944 (+)
fip1l1 NA coding downstream 328787 63764769 ~ 63822100 (+)
gsx2 gsx2 coding downstream 659668 64095650 ~ 64097660 (+)
LOC103022002 LOC103022002 coding downstream 666299 64102281 ~ 64104332 (+)
pdgfra pdgfra coding downstream 675737 64111719 ~ 64144324 (+)
LOC111191941 NA non-coding upstream 135099 63297863 ~ 63298732 (+)
G30335 NA non-coding upstream 145697 63263950 ~ 63288134 (+)
G30314 NA non-coding upstream 283616 63149666 ~ 63150215 (+)
G30311 NA non-coding upstream 291163 63139298 ~ 63142668 (+)
G30280 NA non-coding upstream 316416 63116862 ~ 63117415 (+)
LOC103041812 NA non-coding downstream 30261 63466243 ~ 63468751 (+)
G30393 NA non-coding downstream 91539 63527521 ~ 63550200 (+)
G30517 NA non-coding downstream 870133 64306115 ~ 64306424 (+)
G30539 NA non-coding downstream 986519 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 987527 64423509 ~ 64425402 (+)
G30362 NA other upstream 88138 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 502698 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 580543 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 1497748 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2908780 60520342 ~ 60525051 (+)
kit kit other downstream 795262 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 1586437 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 1641798 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 1662520 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 1663309 65099291 ~ 65099362 (+)

Expression


Co-expression Network