LOC103041812


Basic Information

Item Value
gene id LOC103041812
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63466243 ~ 63468751 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40768
CCCTCCTCGAGCCTGACTCTGGTCTTTCTGTTCTGCAGCTGAGAGCAGATGGAGCTGTGTCTTAGGGCGTGTTTGGAAGGTTGGAGTTCTGAACCACCTGGTTAAGTGGTTTTTGAAGCTTTCAATGAGTACTACAATGGTAACTGCAAAGAAGTGGCTTGCAAGTGTGGATTCAGGCTGGAATAATGCCCTCTACACAAAACCTCAGATAAGAGGTATGCAGATGTAGCCCCTGTCTGAAATGGGAGGTGTCTTGCACAAAGCTGATGCTGGAAAGACATGTGGATTGTGGCTGTTGCAGTAGGTGACCAGGTCAAGTTAGTCAGAATCTGCCTTCTGAGCCCTTGGATGCAGTGGAGCCCTGTTGATGCTACAGCCTTGACATTTGCCACAGCCTGTAATTTTAGACCAGAGGTCTTTTGCTCTGACCTTAAATCTAGATTGGAAAGTGCCATTATTaaaagagaatgagaagttGAGTAGTGTgggatatttattttatttattattttttattttttgtagtttcTCCTTTTCTACCTCAATGTATTTTTCTAAGGTTTGATTGAAATTATTTCGTT
>XR_002649180.1
ATGAtccccctctctcctctctgctcGTTTCTCCCTCCTCGAGCCTGACTCTGGTCTTTCTGTTCTGCAGCTGAGAGCAGATGGAGCTGTGTCTTAGGGCGTGTTTGGAAGGTTGGAGTTCTGAACCACCTGGTTAAGTGGTTTTTGAAGCTTTCAATGAGTACTACAATGGTAACTGCAAAGAAGTGGCTTGCAAGTGTGGATTCAGGCTGGAATAATGCCCTCTACACAAAACCTCAGATAAGAGGTATGCAGATGTAGCCCCTGTCTGAAATGGGAGGTGTCTTGCACAAAGCTGATGCTGGAAAGACATGTGGATTGTGGCTGTTGCAGTAGGTGACCAGGTCAAGTTAGTCAGAATCTGCCTTCTGAGCCCTTGGATGCAGTGGAGCCCTGTTGATGCTACAGCCTTGACATTTGCCACAGCCTGTAATTTTAGACCAGAGGTCTTTTGCTCTGACCTTAAATCTAGATTGGAAAGTGCCATTATTaaaagagaatgagaagttGAGTAGTGTgggatatttattttatttattattttttattttttgtagtttcTCCTTTTCTACCTCAATGTATTTTTCTAAGGTTTGATTGAAATTATTTCGTTGCCCCTTATACATTGACTTGTACAGCTTTGTATAACTTATGCTTTGCATGTATATGCTGTTATCATTACGGTTTTATTCCAAAGCCTATGATCAGACAATGTCtacgtaaaaataaagtaatgctGGAACCTCA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU40768 False 581 lncRNA 0.42 6 63466275 63468617
XR_002649180.1 True 747 lncRNA 0.41 6 63466243 63468751

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107601933,LOC107755228 coding upstream 86721 63365674 ~ 63379522 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 131375 63318652 ~ 63334868 (+)
ociad2 ociad2 coding upstream 151286 63307949 ~ 63314957 (+)
ociad1 NA coding upstream 170520 63290134 ~ 63295723 (+)
zar1 zar1 coding upstream 331506 63132960 ~ 63134737 (+)
rasl11b rasl11b,LOC107718428,LOC107601936 coding downstream 52794 63521545 ~ 63524944 (+)
fip1l1 NA coding downstream 296018 63764769 ~ 63822100 (+)
gsx2 gsx2 coding downstream 626899 64095650 ~ 64097660 (+)
LOC103022002 LOC103022002 coding downstream 633530 64102281 ~ 64104332 (+)
pdgfra pdgfra coding downstream 642968 64111719 ~ 64144324 (+)
G30383 NA non-coding upstream 30261 63433831 ~ 63435982 (+)
LOC111191941 NA non-coding upstream 167511 63297863 ~ 63298732 (+)
G30335 NA non-coding upstream 178109 63263950 ~ 63288134 (+)
G30314 NA non-coding upstream 316028 63149666 ~ 63150215 (+)
G30311 NA non-coding upstream 323575 63139298 ~ 63142668 (+)
G30393 NA non-coding downstream 58770 63527521 ~ 63550200 (+)
G30517 NA non-coding downstream 837364 64306115 ~ 64306424 (+)
G30539 NA non-coding downstream 953750 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 954758 64423509 ~ 64425402 (+)
G30543 NA non-coding downstream 986023 64454774 ~ 64456432 (+)
G30362 NA other upstream 120550 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 535110 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 612955 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 1530160 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 2941192 60520342 ~ 60525051 (+)
kit kit other downstream 762493 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 1553668 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 1609029 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 1629751 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 1630540 65099291 ~ 65099362 (+)

Expression


Co-expression Network