G30393


Basic Information

Item Value
gene id G30393
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63527521 ~ 63550200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40773
ATTTTAACCTGTTAAGTCACATGTTTTTGATGCAAAGCTGTGAAACTGAGACTGAGGTTTTTGGTTGCTTACAACAAAATGTGTATCTAcagcattttaacatttttctaacactttttttaacatttcacaCTACTGTTGGCACTTGGGGCTTGAGACTGTGTTCAGTTGTTTGCATAAGACACCCTTAAATGCTTAGCAAGGATTTAAACAAACAATGTAGTAGTAACACAGATTTTATCTCACACTTCCCTGGTCACAAACATAGTCTACTACCAAagagaataaatcaacaataatgCACAGAGATTCTGCTGTTACTCGGTCATATTTCAATGAGACATTAAAGTTTAATACAcagatcaggaaaaaaaaaataacagatcacttaaaaatgatgagtttccttgattttaccaaattgaaatcctctggaatataatcaagaggaaaatggaagAACTGCTTGAgcttttacaccaggagtggaaaaaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcataaaaactgtgattaagaaccaaggttattccaacaaatattgatttctgaactcttcaaactttataaatatgaacttgttttcttagcattGTTTGAGCTCTgcgtttttttgttatttcagccatttctcattttctgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40773 True 689 lncRNA 0.41 2 63527521 63550200

Neighbor

gene id symbol gene type direction distance location
rasl11b rasl11b,LOC107718428,LOC107601936 coding upstream 2577 63521545 ~ 63524944 (+)
spata18 spata18,LOC107683994,LOC107601933,LOC107755228 coding upstream 147999 63365674 ~ 63379522 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 192653 63318652 ~ 63334868 (+)
ociad2 ociad2 coding upstream 212564 63307949 ~ 63314957 (+)
ociad1 NA coding upstream 231798 63290134 ~ 63295723 (+)
fip1l1 NA coding downstream 214569 63764769 ~ 63822100 (+)
gsx2 gsx2 coding downstream 545450 64095650 ~ 64097660 (+)
LOC103022002 LOC103022002 coding downstream 552081 64102281 ~ 64104332 (+)
pdgfra pdgfra coding downstream 561519 64111719 ~ 64144324 (+)
srd5a3 NA coding downstream 844009 64394209 ~ 64397629 (+)
LOC103041812 NA non-coding upstream 58770 63466243 ~ 63468751 (+)
G30383 NA non-coding upstream 91539 63433831 ~ 63435982 (+)
LOC111191941 NA non-coding upstream 228789 63297863 ~ 63298732 (+)
G30335 NA non-coding upstream 239387 63263950 ~ 63288134 (+)
G30314 NA non-coding upstream 377306 63149666 ~ 63150215 (+)
G30517 NA non-coding downstream 755915 64306115 ~ 64306424 (+)
G30539 NA non-coding downstream 872301 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 873309 64423509 ~ 64425402 (+)
G30543 NA non-coding downstream 904574 64454774 ~ 64456432 (+)
G30587 NA non-coding downstream 979730 64529930 ~ 64530163 (+)
G30362 NA other upstream 181828 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 596388 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 674233 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 1591438 61926080 ~ 61936083 (+)
c3h14orf2 NA other upstream 3002470 60520342 ~ 60525051 (+)
kit kit other downstream 681044 64231244 ~ 64269695 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 1472219 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 1527580 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 1548302 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 1549091 65099291 ~ 65099362 (+)

Expression


Co-expression Network