G30409


Basic Information

Item Value
gene id G30409
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63527511 ~ 63550219 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40805
tcatttagagcatttatttgcagaaaatgagaaatggctgaaataacaaaaaaacgcAGAGCTCAAACaatgctaagaaaacaagttcatatttataaagtttgaagagttcagaaatcaatatttgttggaataaccttggttcttaatcacagtttttatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataacttttttccactcctggtgtaaaagcTCAAGCAGTTcttccattttcctcttgattatattccagaggatttcaatttggtaaaatcaaggaaactcatcatttttaagtgatctgttattttttttttcctgatctgTGTATTAAACTTTAATGTCTCATTGAAATATGACCGAGTAACAGCAGAATCTCTGTGcattattgttgatttattctctTTGGTAGTAGACTATGTTTGTGACCAGGGAAGTGTGAGATAAAATCTGTGTTACTACTACATTGTTTGTTTAAATCCTTGCTAAGCATTTAAGGGTGTCTTATGCAAACAACTGAACACAGTCTCAAGCCCCAAGTGCCAACAGTAGtgtgaaatgttaaaaaaagtgttagaaaaatgttaaaatgctgTAGATAAAAAACCTCAGTCTCAGTTTCACAGCTTTGCATCAAAAACATGTGACTTAACAGGTTAAAATAAATTGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40805 True 697 lncRNA 0.55 3 63527511 63550219

Neighbor

gene id symbol gene type direction distance location
sgcb sgcb,LOC107597442,LOC107665396,LOC107718388,LOC107601954,LOC107683993,LOC107755229 coding downstream 163100 63357911 ~ 63364411 (-)
lrrc66 NA coding downstream 171222 63335850 ~ 63356289 (-)
LOC103038514 LOC108414611 coding downstream 408015 63114090 ~ 63119496 (-)
trappc8 trappc8 coding downstream 462279 63014238 ~ 63065232 (-)
LOC103046711 LOC108414824 coding downstream 519530 62979312 ~ 63007981 (-)
lnx1 lnx1,LOC107683953,LOC107665364 coding upstream 273653 63823872 ~ 63907665 (-)
kdr kdr coding upstream 785494 64335713 ~ 64370564 (-)
clock clock,clocka coding upstream 876885 64427104 ~ 64500676 (-)
nmu nmu coding upstream 956740 64506959 ~ 64526668 (-)
cep135 cep135 coding upstream 1056152 64606371 ~ 64626394 (-)
G30412 NA non-coding downstream 18080 63509227 ~ 63509431 (-)
G30408 NA non-coding downstream 58760 63466320 ~ 63468751 (-)
G30410 NA non-coding downstream 78939 63447890 ~ 63448572 (-)
G30354 ociad2 non-coding downstream 214456 63307994 ~ 63313055 (-)
G30348 NA non-coding downstream 231788 63292019 ~ 63295723 (-)
G30421 NA non-coding upstream 63547 63613766 ~ 63614344 (-)
G30454 NA non-coding upstream 214606 63764825 ~ 63774134 (-)
G30459 NA non-coding upstream 332286 63882505 ~ 63965793 (-)
G30460 NA non-coding upstream 334141 63884360 ~ 63885522 (-)
G30474 NA non-coding upstream 428845 63979064 ~ 63979363 (-)
usp46 usp46 other downstream 42490 63433792 ~ 63485021 (-)
G30376 NA other downstream 192665 63330044 ~ 63334846 (-)
fryl fryl,LOC107683942,LOC107665346 other downstream 239403 63136951 ~ 63288108 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 1636782 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 2162633 61292876 ~ 61364878 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 1224465 64774684 ~ 64799176 (-)
trnad-guc_7 NA other upstream 1542859 65093078 ~ 65093149 (-)
trnad-guc_8 NA other upstream 1547383 65097602 ~ 65097673 (-)
LOC103031958 myo6 other upstream 3312246 66862465 ~ 67044318 (-)
G31424 NA other upstream 3873653 67423872 ~ 67432424 (-)

Expression


Co-expression Network