G30517


Basic Information

Item Value
gene id G30517
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64306115 ~ 64306424 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40949
GCGCTTCACACTACTCTCgcagtgcatcgcgtgggggaaaaactttacagtgtgtcccaatttaggggccgCATCCTTcggaggctgtattcgaagacagattgcgtcacagctgcgcagtaatacaccgcctatctctgtgggtcgcatcctccagagtatgctgcctgtgaattgggacacaccccgacacgcgctgactctggaaaggaaatatgcaggtgatgcgcaatattttgacggcacccccgatgaagccagacggcaccccagggtgccgcggcaccctggttgagaaacactgctgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40949 True 310 lncRNA 0.32 1 64306115 64306424

Neighbor

gene id symbol gene type direction distance location
pdgfra pdgfra coding upstream 161791 64111719 ~ 64144324 (+)
LOC103022002 LOC103022002 coding upstream 201783 64102281 ~ 64104332 (+)
gsx2 gsx2 coding upstream 208455 64095650 ~ 64097660 (+)
fip1l1 NA coding upstream 484015 63764769 ~ 63822100 (+)
rasl11b rasl11b,LOC107718428,LOC107601936 coding upstream 781171 63521545 ~ 63524944 (+)
srd5a3 NA coding downstream 87785 64394209 ~ 64397629 (+)
tmem165 tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960 coding downstream 93248 64399672 ~ 64411701 (+)
LOC103022915 NA coding downstream 105845 64412269 ~ 64418443 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding downstream 265946 64572370 ~ 64589618 (+)
chst14 chst14,LOC107665414 coding downstream 285233 64591657 ~ 64602638 (+)
G30393 NA non-coding upstream 755915 63527521 ~ 63550200 (+)
LOC103041812 NA non-coding upstream 837364 63466243 ~ 63468751 (+)
G30383 NA non-coding upstream 870133 63433831 ~ 63435982 (+)
LOC111191941 NA non-coding upstream 1007383 63297863 ~ 63298732 (+)
G30335 NA non-coding upstream 1017981 63263950 ~ 63288134 (+)
G30539 NA non-coding downstream 116077 64422501 ~ 64422895 (+)
G30540 NA non-coding downstream 117085 64423509 ~ 64425402 (+)
G30543 NA non-coding downstream 148350 64454774 ~ 64456432 (+)
G30587 NA non-coding downstream 223506 64529930 ~ 64530163 (+)
G30588 LOC107659282 non-coding downstream 235691 64542115 ~ 64543421 (+)
kit kit other upstream 36420 64231244 ~ 64269695 (+)
G30362 NA other upstream 960422 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1374982 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1452827 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2370032 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 715995 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 771356 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 792078 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 792867 65099291 ~ 65099362 (+)
G31000 NA other downstream 1522357 65828781 ~ 65837365 (+)

Expression


Co-expression Network