G30540


Basic Information

Item Value
gene id G30540
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64423509 ~ 64425402 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40982
GGAGCAAACGGCACCATTCGCTTAAAAAGCTTCCATAATGTCTTTGTTAATGTAAGAATAGCCTGGCTCATCAAATGAACCCAATGCAGCACACTCTCTCTGATATTAACAGCACCTTTACAAAAACCCAcagcttatttatttaaagtctaCGGGGAAACGGCGTTATTCAGCAACTCACTGGATTTCAAGTTATGTTGTGAACCCtaaaatttttaaaagttaaaacctAATCACAGGTGCTTTGAAGTAATTTGATAATCATgatgctttaaaatgttctcTCCTTTGTGCACTGACCAGATCAATTTCATGAGCCAAACAAGTGTTCTGCAAAGAACGTCACACATACGAAGGTTAAATGATAGCAAGAGAGAACACTGATAGACATTCAGAACTTCTAGTGCATACATCTGAACTACAGAACATTAAACATGAGTAACCAGCTCCTTTTCCATTGGGCTTTTTCAATAGGactactaaaatgtatttttaagggaaataaaaaaaagaaattcaacAGGATTTTCGGCAAGTATTCTGATCATTCCTCCCAGCTCTTTGgatacattatataaaaaaaaaattacttcacACCATCCGACAATGTTGAAATTATGCTGAATGCCAGAGACCAGTTACATAAATGTTAAGGGacatctatttttatatatatttatatatattaaaaaaaagagaacgtGGCTGGCTGAATAGCTCATTGAGACCagtggtcacttaatagagagacagaaatagagagatagagagtaaaGGTGACTGATGTGGGTTTGAGCATCCTGAACCGGCCTGAGGGACACAACCTCTGGGACCCTAACTATAGACAGACACGTTGCCTTGCTCATACCTTGCTGTCCTAatcctaaataaattaaagaattttggAGAAAGAGGGCTGTTCTTTTATAGAATGGAAATTTTATAGAATATGGAATTCATTGTGACATGTTTATCTGTACGCACTTCTGTCAGTTGCTATTCTGATACAGTTTAGGTATCAGTATAATCACACTTTTTAGTCCCGGTGAGTAATTTGTTTCCTCTTAAAACAAACTGAGGCACTTTCCTCACCCTTTAATTCTGTCAGAAAAATGCCATACTTTTTGTGTGTGGATATAGAACTTGAACAAATTACTATTTTATGTTAAAGCAGGAGTGCATAATCTTATTTACAAAGGGctggtgtggctgcaggttttttaTTCCAGCCAAAGAAAGCATGTATTGGCTGCGTACCAAATGTAAAGCCTACAGTCAGGCTGGGCTGCATTTGTCAGCCACTACGTGATAGAAGACTGCTCCACACTGAAGGATCCTTAGTAAGTATACAGCCAGAAAAATGGAGACAAAATTCGAAGCAATTTGAgggacgcaactgatgtatcaTTCATGGTCCTCGGTTACCCACAATTCACTGCTCATATACCCACCAAAGATAAAAGAAGCAATGTTGGTTTCAGATCACCATGAACTGAACTACAGCCTACATATTAGAAGGCAGCCAAGATCAGTTGTTCGAAGACGGACCAACTGATTAAACGAGTGGAATTAAGTGCGTCGTTTGTTGTTTACAAAGAAAACCTGCGGCCACACCGGCCATTTGCAGATAAAGTTTCACACCCCTGCTTTGAAGGTTACCCTCCTGAGCCCGTGGATGAGGAGGTTGACCTTACTTTCTTCCCATTATATAATTAAACCAGTTATATGCTGAAGCAGATACCCGAGCAAGTGCATACTAAATACAAATGAATGCGCtttattgtaattaatattaaataaatcgTGAATTTCAGATATCTGATccatgaataaaatgaaattcaGTTTATAAACGTACAATTTTTTGAGAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40982 True 1873 lncRNA 0.35 2 64423509 64425402

Neighbor

gene id symbol gene type direction distance location
LOC103022915 NA coding upstream 5066 64412269 ~ 64418443 (+)
tmem165 tmem165,LOC107665411,LOC107755243,LOC107601909,LOC107573988,LOC107683960 coding upstream 11808 64399672 ~ 64411701 (+)
srd5a3 NA coding upstream 25880 64394209 ~ 64397629 (+)
pdgfra pdgfra coding upstream 279185 64111719 ~ 64144324 (+)
LOC103022002 LOC103022002 coding upstream 319177 64102281 ~ 64104332 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding downstream 146968 64572370 ~ 64589618 (+)
chst14 chst14,LOC107665414 coding downstream 166255 64591657 ~ 64602638 (+)
kiaa1211 kiaa1211 coding downstream 203771 64629173 ~ 64673511 (+)
LOC103038194 NA coding downstream 269560 64694962 ~ 64702540 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding downstream 286771 64712173 ~ 64728301 (+)
G30539 NA non-coding upstream 614 64422501 ~ 64422895 (+)
G30517 NA non-coding upstream 117085 64306115 ~ 64306424 (+)
G30393 NA non-coding upstream 873309 63527521 ~ 63550200 (+)
LOC103041812 NA non-coding upstream 954758 63466243 ~ 63468751 (+)
G30383 NA non-coding upstream 987527 63433831 ~ 63435982 (+)
G30543 NA non-coding downstream 29372 64454774 ~ 64456432 (+)
G30587 NA non-coding downstream 104528 64529930 ~ 64530163 (+)
G30588 LOC107659282 non-coding downstream 116713 64542115 ~ 64543421 (+)
G30589 NA non-coding downstream 118901 64544303 ~ 64546122 (+)
G30615 cep135 non-coding downstream 187558 64612960 ~ 64614108 (+)
kit kit other upstream 153814 64231244 ~ 64269695 (+)
G30362 NA other upstream 1077816 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1492376 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1570221 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2487426 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 597017 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 652378 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 673100 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 673889 65099291 ~ 65099362 (+)
G31000 NA other downstream 1403379 65828781 ~ 65837365 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017284 BX088688.1 non-coding NC_007131.7 CM002904.2 22179916 ~ 22180508 (+)