G30581


Basic Information

Item Value
gene id G30581
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64464239 ~ 64465591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41031
atcatgtgtgccacaattataagcacccctgatgttaatactttgtacaacccccttttgccaacaaaacagcacctaatcttctcctgtaatgtttcacaagatgggagaatacagaaagagggatctttgaccattcctctttgcacactctctaaatcatccaacgacctgggtcctctcctctgcactctcctcttcagctcaccccacaggttttcaatggggttgaggtctggggactgagatggccatgggaggagcttgattctgtgtgcggtgaaccatttctgtgtagatttggccacatgtttagggtcattatcttgctgaaagacccagtgacgacccatcttcagctttcgggcagaagccaccagattttgttttaaaatgtcctggtattttagcgcattcatgatgccatgcaccctaacaaggttcccagggcctttagaagagaaacaggcccacagcgtcactgatcccccgccgtatttcacagtgggcatgaggtgcttttctgcatactcagctcttgtgttacgccagacccacttagagcatttgttgccaaaaagctctatctttgtttcatctgaccaaagcacacggtcccagttgaagtcatagtaccgcttagcaaactccaaacgtttgcgtttatgattgtgagtgagaaatggtttcttccgtgcatgcctcccaaacagcttgttggcatgtagatagcgcctgatggttgttttggagactttgtgaccccaagaagctaccatttgttgcaattctgtaacagtgagctttggagaactttttatttctcttatcatcctcctcactgtgcgtggtggcaaaataaacttgcgtcctcgtccaggcttgtttaccactgttccagttgttttaaacttcttaataattcctctgacagtagatatggacaggtgtaggcgagtagcgattttcttgtagccattgcctgacttgtgaaggtcaacacacatctgcctcacttgaatggtatgttcctttgtctttcccatgttgaagataaatggcctctgtgtcacgtcatatttataccccagggaaacaggaagttgtgaattactaattaaatgttcctacatactctgatcaacttcgtaaactactgtagaagtgacagaaatacttttattacatttatttcctaagaattgttaggggtgccaataattgtggaacaggtgattttatgaagaataattatttcttagtcagggattttatttccaaaggttggactttacttttttttcccatcgtggtcctatattattttgaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41031 True 1332 lncRNA 0.42 2 64464239 64465591

Neighbor

gene id symbol gene type direction distance location
kdr kdr coding downstream 93675 64335713 ~ 64370564 (-)
lnx1 lnx1,LOC107683953,LOC107665364 coding downstream 556574 63823872 ~ 63907665 (-)
sgcb sgcb,LOC107597442,LOC107665396,LOC107718388,LOC107601954,LOC107683993,LOC107755229 coding downstream 1099828 63357911 ~ 63364411 (-)
lrrc66 NA coding downstream 1107950 63335850 ~ 63356289 (-)
LOC103038514 LOC108414611 coding downstream 1344743 63114090 ~ 63119496 (-)
nmu nmu coding upstream 41368 64506959 ~ 64526668 (-)
cep135 cep135 coding upstream 140780 64606371 ~ 64626394 (-)
aasdh NA coding upstream 207924 64673515 ~ 64694914 (-)
ppat ppat,LOC107737308,LOC107683925,LOC107556156,LOC107721366,LOC107665312 coding upstream 236909 64702500 ~ 64719032 (-)
LOC103037239 NA coding upstream 286641 64752232 ~ 64762149 (-)
G30554 NA non-coding downstream 194585 64266410 ~ 64269654 (-)
G30502 NA non-coding downstream 319952 64141052 ~ 64144287 (-)
G30489 NA non-coding downstream 349732 64111726 ~ 64114507 (-)
G30477 NA non-coding downstream 410987 64052561 ~ 64053252 (-)
G30474 NA non-coding downstream 484876 63979064 ~ 63979363 (-)
G30597 NA non-coding upstream 62194 64527785 ~ 64528040 (-)
LOC111191943 NA non-coding upstream 101985 64567576 ~ 64571280 (-)
G30608 LOC107721360,LOC107665383,LOC107683916,LOC107556159 non-coding upstream 114783 64580374 ~ 64582695 (-)
G30598 exoc1 non-coding upstream 121862 64587453 ~ 64590755 (-)
G30804 NA non-coding upstream 255304 64720895 ~ 64832398 (-)
scfd2 scfd2 other downstream 700566 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 979218 63433792 ~ 63485021 (-)
G30376 NA other downstream 1129393 63330044 ~ 63334846 (-)
fryl fryl,LOC107683942,LOC107665346 other downstream 1176131 63136951 ~ 63288108 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 2573510 61831841 ~ 61890729 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 309093 64774684 ~ 64799176 (-)
trnad-guc_7 NA other upstream 627487 65093078 ~ 65093149 (-)
trnad-guc_8 NA other upstream 632011 65097602 ~ 65097673 (-)
LOC103031958 myo6 other upstream 2396874 66862465 ~ 67044318 (-)
G31424 NA other upstream 2958281 67423872 ~ 67432424 (-)

Expression


Co-expression Network