G30640 (ppat,LOC106560282,LOC107683925)


Basic Information

Item Value
gene id G30640
gene name ppat,LOC106560282,LOC107683925
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64709323 ~ 64719038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41109
AGTATCTTGTTCATTTCTACATAATTATGATCCACCTTCTTGCGCAAAGCGGCAGCGTTGACAAGTTCTCCGTTGTGTGCCACAGCAATCTTTCCATGCAGGGTGTCCACCACAAATGGCTGACAGTTCTGTAGCTCTGATATTCCTGTGGTGGAATATCGAGTGTGCCCAATCCCCAAATTACCATATCTCAGCTTCAGCAAGTCCTCCGGTTTAAAAGCTGTGCTCACTAATCCCATGCCcTTAAGGGTGGTGTATGTGGGTGGAGTGGACCCATTACTCGTAACAATTCCCGCACTCTCCTGACctCTGTGCTGTAAGGCCACCAGACCCAGGGTCAGCACCTGCGCCACTTCCAGCTGGGTCGGCCACTCTCCCGCTGCCACACAGCCGAACACGCCGCACTCCTCTCCGATACCGGACTCCTCAAACTCCAtgcccgctgctgctgctgcgtgtCCTCGCGCTCTCCTGGAGTTCAGACTCCCTGAGCTCGGGCTCTCCCCACGCCGCCTCAAAATCGCTCAGTCCGAGCACGTGCTGCTGTACCACGCCGCCCGGCGCCGGTGTtgtgtcgagttatgctacccatcgatacgtgCTACTTAGCGGCTCTGCGCATGCGcccaccaacattttttttaatgctttcatgtttttcatgatacttccttaagttttttttattgggagcattaaa

Function

symbol description
ppat Predicted to enable amidophosphoribosyltransferase activity. Predicted to be involved in purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleoside metabolic process and purine nucleobase biosynthetic process. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human PPAT (phosphoribosyl pyrophosphate amidotransferase).

NR:

description
PREDICTED: amidophosphoribosyltransferase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41109 True 700 lncRNA 0.37 3 64709323 64719038

Neighbor

gene id symbol gene type direction distance location
LOC103038194 NA coding upstream 6783 64694962 ~ 64702540 (+)
kiaa1211 kiaa1211 coding upstream 35812 64629173 ~ 64673511 (+)
chst14 chst14,LOC107665414 coding upstream 106685 64591657 ~ 64602638 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding upstream 119705 64572370 ~ 64589618 (+)
LOC103022915 NA coding upstream 290880 64412269 ~ 64418443 (+)
LOC103042444 NA coding downstream 12621 64731659 ~ 64742240 (+)
LOC103042125 NA coding downstream 23616 64742654 ~ 64749709 (+)
LOC103041822 NA coding downstream 84186 64803224 ~ 64810333 (+)
LOC111190912 NA coding downstream 107657 64826695 ~ 64834077 (+)
LOC103041527 LOC103041527 coding downstream 129610 64848648 ~ 64856825 (+)
G30617 cep135 non-coding upstream 86985 64615427 ~ 64622338 (+)
G30615 cep135 non-coding upstream 95215 64612960 ~ 64614108 (+)
G30589 NA non-coding upstream 163201 64544303 ~ 64546122 (+)
G30588 LOC107659282 non-coding upstream 165902 64542115 ~ 64543421 (+)
G30587 NA non-coding upstream 179160 64529930 ~ 64530163 (+)
G30646 NA non-coding downstream 1917 64720955 ~ 64832837 (+)
G30644 NA non-coding downstream 11026 64730064 ~ 64822659 (+)
G30652 NA non-coding downstream 33195 64752233 ~ 64774978 (+)
G30653 NA non-coding downstream 34488 64753526 ~ 64755851 (+)
G30664 NA non-coding downstream 70083 64789121 ~ 64791799 (+)
kit kit other upstream 439628 64231244 ~ 64269695 (+)
G30362 NA other upstream 1363630 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1778190 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1856035 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2773240 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 303381 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 358742 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 379464 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 380253 65099291 ~ 65099362 (+)
G31000 NA other downstream 1109743 65828781 ~ 65837365 (+)

Expression


Co-expression Network