G30646


Basic Information

Item Value
gene id G30646
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64720955 ~ 64832837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41139
ctccaccagtcttacactctgcttttggataacttcatgcttttactcctggtgcaaaaattcaagcagttcagcttggtttgatggcttgtgatcttgtGAGGTTTGTGGCCTcttgatcttcctcttgattacattccatatgatacacacacacacacactctcacatactctcttgcaaacacacactgaaaaacgCTCTTACACACTGCGCACCTACACGCAGGCGATAATGCAAGTCAAATTATCCTGCTTCTTTCACACATGGAAAGACTTTAATCTAATTCTTTCAATATGGAAAACCTTCTAAAAAGAGTACCATAAATGATGTGACCTTTGCTGGTACTATTCCTCATCTGTTACGTTGATGAGGTTATGATACATTACAAAATCCTTATATTTCATTCTGAAACTCTCACCATAAGACATGgtgtcacaccatatgacagATCACATCACACAACAATCTGAATGCAGAAATCTGTATTGTCTGCATTCAGCTAACAAATGAACTTGGTTTGGCAAATGACTGAAACCATTTTCGGTTACAGCAGAATCACAAAATTGTTGAATAACATGTGAATCATGCTCAACATAGAATACATTACCTACTCCACTTACTGTATTCATTACACTTTAGATACAggaattctatttatttttttttatttatttatttattttatttctgatttttccccattttctcccaatttggatatccaattgtcccacctctTTGTGCGTCCTcatcaccggtgacgcccgtgacccttggaggatgcggatgagcacacgcctcctccgacacgtgtgaagtcaatcaccccttttttcgagctgctgcggatgaatcattgcctgagtaGCCAGCGTGCTCTGAGGAAaacacagcggctaggttccgattcatccgctcacagatgcctcgtgccgcccagcgccaccttaagtgtgatgaagaaagagcgccatctacccaccccagagggagcagagccaattttgctccctctaagcaccggcagctgatggcaaagctgcatgagctggtgttcgaacctgcgacctcccgctcatagtggcaatgcattagaccgctggaccactcggcgcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41139 True 1120 lncRNA 0.44 4 64720955 64832837

Neighbor

gene id symbol gene type direction distance location
LOC103038194 NA coding upstream 18415 64694962 ~ 64702540 (+)
kiaa1211 kiaa1211 coding upstream 47444 64629173 ~ 64673511 (+)
chst14 chst14,LOC107665414 coding upstream 118317 64591657 ~ 64602638 (+)
exoc1 exoc1,LOC107683916,LOC107555758 coding upstream 131337 64572370 ~ 64589618 (+)
LOC103022915 NA coding upstream 302512 64412269 ~ 64418443 (+)
LOC103041527 LOC103041527 coding downstream 15811 64848648 ~ 64856825 (+)
LOC103036008 LOC103036008,LOC108415307 coding downstream 26493 64859330 ~ 64868413 (+)
LOC103035382 LOC108415267 coding downstream 37014 64869851 ~ 64876715 (+)
LOC103035066 NA coding downstream 48101 64880938 ~ 64890653 (+)
LOC103034427 NA coding downstream 93698 64926535 ~ 64934468 (+)
G30640 ppat,LOC106560282,LOC107683925 non-coding upstream 1917 64709323 ~ 64719038 (+)
G30617 cep135 non-coding upstream 98617 64615427 ~ 64622338 (+)
G30615 cep135 non-coding upstream 106847 64612960 ~ 64614108 (+)
G30589 NA non-coding upstream 174833 64544303 ~ 64546122 (+)
G30588 LOC107659282 non-coding upstream 177534 64542115 ~ 64543421 (+)
G30683 NA non-coding downstream 59561 64892398 ~ 64909454 (+)
LOC111190945 NA non-coding downstream 131475 64964312 ~ 64982401 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding downstream 151641 64984478 ~ 64987306 (+)
G30718 NA non-coding downstream 217987 65050824 ~ 65159264 (+)
G30722 LOC108415433 non-coding downstream 224682 65057519 ~ 65059450 (+)
kit kit other upstream 451260 64231244 ~ 64269695 (+)
G30362 NA other upstream 1375262 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1789822 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1867667 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2784872 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 189582 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 244943 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 265665 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 266454 65099291 ~ 65099362 (+)
G31000 NA other downstream 995944 65828781 ~ 65837365 (+)

Expression


Co-expression Network