G30653


Basic Information

Item Value
gene id G30653
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64753526 ~ 64755851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41146
ACATACTGTATGTCCTCACCACTGCTGATATTTACCTTTGGAATGGTATATTCTCCTATCTGGACATCCTTTGAAGTAGCACGGGCCAAGTTAAAAGGAATGATGTTTCCCATCCTCTGGATCTCGTGGATAACAGCATTAGTGTACGGAAGATTGTCTCTGTCCATCATAGACGGCTGTCGTGAAGACCCCACCACCTGGTCGATCTCAGCATGAACCTTGGCTTAGCATACCAGAAAAGAAGCAGTTTTAAAAAGAGTCTTCATATATGTGCATGTGTAACGTGTGCAAATTAAAATCAAAACTGAAAATGGTGGGACAAACAACAGAGTCAGTATTTTGGGTGGAGTATGGTAAAATCAACCTGCGATTTTCTTAATCGGTCAATTATTAAATGTATACtatctgtgcatgttttaaaaaaatgttgctcAACCGTGTTACTGAACCTGCGTTTAGCTACAGTTCACCAACAAACTAGAATCACCTCAGAAAAACACTGAAgctcattttactttttatttctaacCACTTCCACTCTGtatgaaactttatttaatcttactttactttttaatgcTTGCATGTTTGTACTcttcatttgtatttattttctgtatctGTTTAGGTTGTTATTTCGAACCATTCACTTTTATTAGTactgttgctgtttttattagtttcattgTTAATTAtggtattatttaataaaacttgactgatttactttgtttttaaatgtgctgtAATTGTATAGTTTTTCTTGTTTAAAATCCTTTTGTTAGATCTATTCATCtttcttattttatactttttaatcTCCACTGTCTATTGTAACTGCTTCTCTACACTGAAAATGAGGGTGACCCTCAAAGTAcctaaaggttgattgattgattgattgattaataagAGTATCAATCTCATacaaattttcatttttttcctgatACAGTATGTCAGTGAAATGTATATACTGTTAAAACCTGACTAGACACTGTTTCACGGGAAGGAATGTCATAAAGCCAGAAATGGTCCAGAAACCAAGCCTGAAAAGTCAACATGCACTAACCTTGTATCTCAGGATATTTGGTCATGTATAATAGGCCCCAGTACAAAGTAGTAGATGTAGTTTCAGTCCCAGCAATAAAAAGGTCCAttgcacaaaaacacagattttcaataGAAAAGTCGGCTGCTTTATCATCCTTGCGctTTTTCCATCTCCTCAAGGAAGCAGTCAATGTAGTCTCTGGGATTCGAGAAGTCACGGTCCATCTTGTGCTCGTCTACCTTGGCCCGGACGTAGTTAAACACGTTGCCCCACAGTTGGATAACTCTTTGATGTGGGCCAGGCAGTCGCCGCATAATTCGTGGGACCATGTTATACATCTAGTGAGAGAAAAGTGGCAAGAAATGGCTTTATATAGCAAACGATTtaccattttttctttacattacaaAA

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41146 True 1465 lncRNA 0.44 2 64753526 64755851

Neighbor

gene id symbol gene type direction distance location
LOC103042125 NA coding upstream 3817 64742654 ~ 64749709 (+)
LOC103042444 NA coding upstream 11286 64731659 ~ 64742240 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding upstream 25225 64712173 ~ 64728301 (+)
LOC103038194 NA coding upstream 50986 64694962 ~ 64702540 (+)
kiaa1211 kiaa1211 coding upstream 80015 64629173 ~ 64673511 (+)
LOC103041822 NA coding downstream 47373 64803224 ~ 64810333 (+)
LOC111190912 NA coding downstream 70844 64826695 ~ 64834077 (+)
LOC103041527 LOC103041527 coding downstream 92797 64848648 ~ 64856825 (+)
LOC103036008 LOC103036008,LOC108415307 coding downstream 103479 64859330 ~ 64868413 (+)
LOC103035382 LOC108415267 coding downstream 114000 64869851 ~ 64876715 (+)
G30640 ppat,LOC106560282,LOC107683925 non-coding upstream 34488 64709323 ~ 64719038 (+)
G30617 cep135 non-coding upstream 131188 64615427 ~ 64622338 (+)
G30615 cep135 non-coding upstream 139418 64612960 ~ 64614108 (+)
G30589 NA non-coding upstream 207404 64544303 ~ 64546122 (+)
G30588 LOC107659282 non-coding upstream 210105 64542115 ~ 64543421 (+)
G30664 NA non-coding downstream 33270 64789121 ~ 64791799 (+)
G30643 NA non-coding downstream 55528 64811379 ~ 64824149 (+)
G30683 NA non-coding downstream 136547 64892398 ~ 64909454 (+)
LOC111190945 NA non-coding downstream 208461 64964312 ~ 64982401 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding downstream 228627 64984478 ~ 64987306 (+)
kit kit other upstream 483831 64231244 ~ 64269695 (+)
G30362 NA other upstream 1407833 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1822393 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1900238 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2817443 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 266568 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 321929 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 342651 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 343440 65099291 ~ 65099362 (+)
G31000 NA other downstream 1072930 65828781 ~ 65837365 (+)

Expression


Co-expression Network