G30664


Basic Information

Item Value
gene id G30664
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64789121 ~ 64791799 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41160
TATAATTGGAATAGTATTTTATTGTTACAGTTTATGCAGTTTCAAACATTCAAAGTCAGTACACTGTTTACATTAAATGTTTAACATAAGACACATAAGTCACATTTATGTTAAATTGTACAGAAATGGGATGAACTGATAATCTAAATCAGGTCTGAACAGCAGCATAAGTTGTAGCATATGCTCAGTTCATGCTGTTAAAAGTACAGATTCCTTGAGAAACTTGTGGGCTTCTGTGGATTAACCTATTAAGGTGCATTGAGGAACCTATAAGAAAAGTTTAGAAGAAAATGTTTTCTGAAGATTCCCTAAAGCGCCCTAGGAAGGTTCCTCCACAGTTTCAAATTAGCTTCTTCAGGGATCTTGTAGTTTTAACAGTGACACTACATCTGGTATGTGgaatagagcaggggtgtccaaactttttttgttgggggccagaaggagaaatatatttgaagtcacaggccacactccataataaaacaaataatgaaatataccactttaaataatactttattcctgattatttcatttacacaccattttacttgacttactatctttattttttgacagtgttgtgtaaactaagctTAATTTCAtgttgtctcttaatattaaactccttaattatggcaacttttagactctgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttgccccatttttctgcgctagaaatgcgcaccctcttcgcttttagagtcttttgccccgttttgtctgcgctagaaatgcgcaccctctccgcttttagtctttttggcccgattttctgcgctaaaaatgcgcaccctctccgcttttagactcttttgccccgtttttctgtgctttgcctaaatttccttcgggataaataaagtatctatctatctatctatctagaaatgcgcactctctccacttttagactctttgccctgtttttctgcgttagaaatgcgcaccctcttcgcttttagactcttttgccccgtttttctgcactagaaatgcaccctcttataaaaacctgcttaacagcgggccaactttcattctaatTCTAAAAAACCTTGCTggccaaaaaaggaaacgggctgcaaatggcccgcgggccgtagtttggacacccctggaatAAAGGGTTACAAGAAGCAAAACATAAATTGAGTTCCCAAAAAAGTCTGAGAACAGTTGAGTAAGGAGATAACAAAGGTGAATTGATGGATCTTGCAGCCTAATTATTCCTTCATCACTGGTCTTCCCTCCAGGACAGCTACTTACCATTAATTGCCATCCTGCATCTATCCCCTACCTAACACCCAACCACACACCTAACACTGATGCATCTGACACACATCGGATACACAGAttgtaaaacatgtttatagCACATCCAAGGTTTctgaatcagaaaaaaacattacccAAATAAAGCACTATTTAATAATGAGTTGATCATTTCAATACACcatattttagaaaatataaacatattcacaAACTGTGAAAAATCATtgccatgtttaaaaaaaattccagGCCATTTTGCTATTGAACATTATGGTTGATTTTCAATTGGTAAAGAGCAGCATcatataaaaacaacaacacccATACGATTTATATGACACGTTTTGTAGGAAGATTaacttaagacagtcttttttcttttaagtctTTTTTAAGCAGTGGGTCTTTAGCCTTTTTGAGAAACTGACTCAATTCGGGGAattgcattcattttaaaaggtttaggATTGAGTGTAACACTAAATTCAAAGTCCAAAGTAGATTTGGATCCAGCTGGAGGGGAGAAAGTGAAGGCTTGTAGGAGagaggtgaaaaaaataaacagctcCATGCGAGCAAGTGACTCACCCAGGCAAAGTCTTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko00591 Linoleic acid metabolism
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU41160 True 1928 lncRNA 0.44 3 64789121 64791799

Neighbor

gene id symbol gene type direction distance location
LOC103042125 NA coding upstream 39412 64742654 ~ 64749709 (+)
LOC103042444 NA coding upstream 46881 64731659 ~ 64742240 (+)
LOC103037884 paics,LOC108415209,LOC107555752,LOC107556158,LOC108257759,LOC107721365,LOC107683924,LOC107665310,LOC107737306 coding upstream 60820 64712173 ~ 64728301 (+)
LOC103038194 NA coding upstream 86581 64694962 ~ 64702540 (+)
kiaa1211 kiaa1211 coding upstream 115610 64629173 ~ 64673511 (+)
LOC103041822 NA coding downstream 11425 64803224 ~ 64810333 (+)
LOC111190912 NA coding downstream 34896 64826695 ~ 64834077 (+)
LOC103041527 LOC103041527 coding downstream 56849 64848648 ~ 64856825 (+)
LOC103036008 LOC103036008,LOC108415307 coding downstream 67531 64859330 ~ 64868413 (+)
LOC103035382 LOC108415267 coding downstream 78052 64869851 ~ 64876715 (+)
G30652 NA non-coding upstream 14143 64752233 ~ 64774978 (+)
G30653 NA non-coding upstream 33270 64753526 ~ 64755851 (+)
G30640 ppat,LOC106560282,LOC107683925 non-coding upstream 70083 64709323 ~ 64719038 (+)
G30617 cep135 non-coding upstream 166783 64615427 ~ 64622338 (+)
G30615 cep135 non-coding upstream 175013 64612960 ~ 64614108 (+)
G30643 NA non-coding downstream 19580 64811379 ~ 64824149 (+)
G30683 NA non-coding downstream 100599 64892398 ~ 64909454 (+)
LOC111190945 NA non-coding downstream 172513 64964312 ~ 64982401 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding downstream 192679 64984478 ~ 64987306 (+)
G30718 NA non-coding downstream 259025 65050824 ~ 65159264 (+)
kit kit other upstream 519426 64231244 ~ 64269695 (+)
G30362 NA other upstream 1443428 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 1857988 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 1935833 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 2853038 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 230620 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 285981 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 306703 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 307492 65099291 ~ 65099362 (+)
G31000 NA other downstream 1036982 65828781 ~ 65837365 (+)

Expression


Co-expression Network