LOC103033886 (LOC108257901,LOC105910874)


Basic Information

Item Value
gene id LOC103033886
gene name LOC108257901,LOC105910874
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65022419 ~ 65046978 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41204
GAGTGTATAAAGATGTGTCATGCTTTTCTGTTAGTCATGGTACATGCCTGTGCAGCACTGCGATGACAAGTGATGActtgcattttgcattttaaatattttatcactCATTCCCCATGGGGCCATACATAAggtacactggattataaagctcattttaagagacactataaggggGTGGGGGGTAGCTAGTTAACCAAGTTAAGTAAAGcgaagctaagtaaacaaaactgttaaaaaaaacatctacacaGAATTCTCTTCTGAAGACTATTTATTTGGATacgtaaagtgcttctgttaatttacagtaagcttagactctctaatttctccagcactaaggctggagtattagcattagcggatAACCGGTCGTGCTGCTCGACAGCTTGCGGTGACCATGATGCAGGCCCAGGCACAACTTCTCTCAGTATCAGCCCATTGGAAACAACCTCAACTCCCCACCACTTTTCCACTGCAGAGCCCAACGTCCTTACAAACTCTACAGCTCAGCATCTGAACATCTCAGAAGTGGACAGCAGCACTACAGAAGAGCTTTCTGCTAATGGCACCCTCATCCAAAATAACACCACAAACAGCACAGAGGCTCCAGCCTCTGCTGCTACAGCGGCTGCGACTGCAGCGGACCAACTCACAGCAGGAGACAATACAAGTGTTCCTGGAAACCACACAGACAGCCAGGAGGGATCTGACCTTTCAGCAGGAGATAACCACCCTCTTTCCACCACTACAGCACCAATTACTACCACCCTGCCCACCACCCTACTGCCCAGAACCGAGCCTCAAACCAGCACGTCAGCTCCAACCACGATACTTCAGACATCCTTGGCTTCTGCCACCAGCTCCCATAGTACCACTGTAGACAACAAATCAGCAACCACCAACTCGGAGACAACAACTGCTCAAACCAGGCAGAACTCTTCAACAGCTCGTAATAAAAGCACAGCAGCTCCAACCACCACAGAGGCACCGACTACAGAGGCCAGCAGGCCCCACAACAGCACTCCAGTGCAGGCTAAAGCTCGTGCAGACACGCCTTCTGAGCTTAACGTCGGAGACGAAGACTCCAGTGCTACTTGGGATCCACTCTTGGCTGGCCTGGTGTCCGTGTTCGTGGTGACTGCTGCCATAGTCTCACTTCTAATATTCCTGAAATTCAGACACCGCAATGAGCGCCCTGAATTCCGCCGTCTACAAGACCTTCCCATGgACGACATGATGGAGGACACTCCTCTCTCCATGTACAGCTACTGAGTGGCTGAGAGAAACCCTTAATGCCTTGAATGAGACACAGGCCTCCTCTGAGCACACCAACCCTAAGCCCACAattcctttatttaaaaacagatgtttTGTTGTTAGGGTACACTGCTGTTAATCTGTCACTGTTTTGCAGAAGGGGAATGCCATGCACTCCTCTTCTCTATGGGAAGGTTAACTCAAAATTCCTGGGCcaaagttatttattatttctttcacAGAAGGAAAATGGAGATTGCTGCCTGAATGAGAGAGTGGGGCTTTTTAAAATCCCTCACAGTGAGGGTGAACCATTGTGCTTAAACACACTCCACTTCAAGCCCTGCTTTACAACAGGGAAAGTTCACTGGCCACTGGCAAAATCCATTACACAAGAAACACAAATGATGTGAGCAGATTTCACTCTAGAAGTTAAATCCTGATTTACTTTGTGAAATATTAAGCCTACTGTCATTTGGTGGAAACAAAAAGCCAAGACCAAAGGAGCAATGTGCCTTCATCACAAAATATTAAAGCTCCAAGCCAGATGGAAGTGGATATCAATGTATAATGATGATTCTGTAAGGTTTAGGATTTTTTGTGTGCGTGTTCTGTTTGCTGTAGACATGCATTTTTCGACATGTCTTGTCTGATCAGAGATGCGGTGCGGTCTttgattcaatatttttttatatacataaactGTGTGTATTGCATTAGCATGGAATTCACATACAGTTTATTCTACAGTTGATTTATTCAACTAAAGTGatataattttaacattttaaaacccAGCAACTAGATTTGTTTTAAATCCGAAGGAAATTTGTTTTGCCCCCCTTAAATTGTACTTACTGCATCCCGGAAGCAGTCAGAGGGAGTAATCTCAAACGCACGCCTGACTAGTCTGTACGTTCCTTaaagaatatatacagtactgcgcaaaagacatacagtacatatacagTTTAAAGACTCTTTATTGGGACAGTGATTAATTATGTGCTTGGGAAACACTAATATTACATGTGCTTATCACCACCAAGCTTAAAATCAATGATTCGTTAGGTTAAATCATGGAATGCATTGAGAAAAAATCTGGAACCaaatctctgtctttctcaaaTAATATCAGTGCCATTTTTccaatatatgttaaataagaACAATTACTGGTAATTAAAATGGTGTcaaacagagaaagagttacTTAAAGACTTTTCCAGAATACTCTGTATAAATAAACAACTTAATCAAACACACAGAGAATTGGTTTCCAGAAAATGGCTGTAGAGGCAAAACTgcctttgcattttttaaaggagtaTAAAAGCATATGAATTAGCCTCACAGTGTAAGTATTAATATATTCCTTTATTTGAAGCCAAAAGCAACATTTATA
>XM_007259499.3
GGTGAGAGGAGAGCTCTGCTGGGAGGTCTGAGATGCTCTCCGCTCCGTATGACTGAACCGAGGCCGCTGTGAGTTACCGTGCCCGCGGGTGAGATCCTCTGCGATGGAGACAGCTCGATTTTAGTTTTGAACAGCTGAGCGCCGTAGGACTGAAGGGTGAAACACGTGGCACAtgagctcagagagagagagagagagaggagagagagagagagagagagagagagagagagagagagaaagagtgagagagagagagaggcagagaacaCTAGGTTCAGTCAGAGGAGCGGAGCGCTCTCAACAACTCAACAAACCTCACAGACTGAAGTTCACTCAGTTCACAGCTCAGACACATAGCGCGCGCAGAGTCCGGGTCACTCCAGACTGATTTAGTTCAGCTGTTTTAATTCTTATTTCACCAAAAGAAGGAAtaaacagagcgagagagagagaaagatgaaggGTCCAGTGAGCGCTGCTGCTCTGTCCGTTCTggtgctctgctgctgctgctgctctctcgCCAGAGGTGACCATGATGCAGGCCCAGGCACAACTTCTCTCAGTATCAGCCCATTGGAAACAACCTCAACTCCCCACCACTTTTCCACTGCAGAGCCCAACGTCCTTACAAACTCTACAGCTCAGCATCTGAACATCTCAGAAGTGGACAGCAGCACTACAGAAGAGCTTTCTGCTAATGGCACCCTCATCCAAAATAACACCACAAACAGCACAGAGGCTCCAGCCTCTGCTGCTACAGCGGCTGCGACTGCAGCGGACCAACTCACAGCAGGAGACAATACAAGTGTTCCTGGAAACCACACAGACAGCCAGGAGGGATCTGACCTTTCAGCAGGAGATAACCACCCTCTTTCCACCACTACAGCACCAATTACTACCACCCTGCCCACCACCCTACTGCCCAGAACCGAGCCTCAAACCAGCACGTCAGCTCCAACCACGATACTTCAGACATCCTTGGCTTCTGCCACCAGCTCCCATAGTACCACTGTAGACAACAAATCAGCAACCACCAACTCGGAGACAACAACTGCTCAAACCAGGCAGAACTCTTCAACAGCTCGTAATAAAAGCACAGCAGCTCCAACCACCACAGAGGCACCGACTACAGAGGCCAGCAGGCCCCACAACAGCACTCCAGTGCAGGCTAAAGCTCGTGCAGACACGCCTTCTGAGCTTAACGTCGGAGACGAAGACTCCAGTGCTACTTGGGATCCACTCTTGGCTGGCCTGGTGTCCGTGTTCGTGGTGACTGCTGCCATAGTCTCACTTCTAATATTCCTGAAATTCAGACACCGCAATGAGCGCCCTGAATTCCGCCGTCTACAAGACCTTCCCATGgACGACATGATGGAGGACACTCCTCTCTCCATGTACAGCTACTGAGTGGCTGAGAGAAACCCTTAATGCCTTGAATGAGACACAGGCCTCCTCTGAGCACACCAACCCTAAGCCCACAattcctttatttaaaaacagatgtttTGTTGTTAGGGTACACTGCTGTTAATCTGTCACTGTTTTGCAGAAGGGGAATGCCATGCACTCCTCTTCTCTATGGGAAGGTTAACTCAAAATTCCTGGGCcaaagttatttattatttctttcacAGAAGGAAAATGGAGATTGCTGCCTGAATGAGAGAGTGGGGCTTTTTAAAATCCCTCACAGTGAGGGTGAACCATTGTGCTTAAACACACTCCACTTCAAGCCCTGCTTTACAACAGGGAAAGTTCACTGGCCACTGGCAAAATCCATTACACAAGAAACACAAATGATGTGAGCAGATTTCACTCTAGAAGTTAAATCCTGATTTACTTTGTGAAATATTAAGCCTACTGTCATTTGGTGGAAACAAAAAGCCAAGACCAAAGGAGCAATGTGCCTTCATCACAAAATATTAAAGCTCCAAGCCAGATGGAAGTGGATATCAATGTATAATGATGATTCTGTAAGGTTTAGGATTTTTTGTGTGCGTGTTCTGTTTGCTGTAGACATGCATTTTTCGACATGTCTTGTCTGATCAGAGATGCGGTGCGGTCTttgattcaatatttttttatatacataaactGTGTGTATTGCATTAGCATGGAATTCACATACAGTTTATTCTACAGTTGATTTATTCAACTAAAGTGatataattttaacattttaaaacccAGCAACTAGATTTGTTTTAAATCCGAAGGAAATTTGTTTTGCCCCCCTTAAATTGTACTTACTGCATCCCGGAAGCAGTCAGAGGGAGTAATCTCAAACGCACGCCTGACTAGTCTGTACGTTCCTTaaagaatatatacagtactgcgcaaaagacatacagtacatatacagTTTAAAGACTCTTTATTGGGACAGTGATTAATTATGTGCTTGGGAAACACTAATATTACATGTGCTTATCACCACCAAGCTTAAAATCAATGATTCGTTAGGTTAAATCATGGAATGCATTGAGAAAAAATCTGGAACCaaatctctgtctttctcaaaTAATATCAGTGCCATTTTTccaatatatgttaaataagaACAATTACTGGTAATTAAAATGGTGTcaaacagagaaagagttacTTAAAGACTTTTCCAGAATACTCTGTATAAATAAACAACTTAATCAAACACACAGAGAATTGGTTTCCAGAAAATGGCTGTAGAGGCAAAACTgcctttgcattttttaaaggagtaTAAAAGCATATGAATTAGCCTCACAGTGTAAGTATTAATATATTCCTTTATTTGAAGCCAAAAGCAACATTTATAATGAGCAAGGAGCTTTTGGGTGATGTTTGTCCTCAAGTGGGAAAGTGCTAATCAGGTACTTTTTCCAAGTGCCATTTGAGTTTGAGTCAGCGTTGACTAGGCCCATCACGATAATTGCGTTAAAAACTTAACAGCCAGTATGGGTTGCCAAAACAAAACATAGATACAAACTATTAAATGTTGTCACATAttcacatataaaaaatatagttcAATATATCCTCCACAAAGATAGTTATCGTGTCGACCTAGTGTTGACTAATCCCCCAGCAAGTGAGATTCCTGCACCGCTGGCTTCTGGTGCCTTGTATATGGTAGAGTTGTTTGCTTGCACTTTATTGTGGGGTTTTGGGGGTGGGATTGTGTTGCTGTGGGAAGGTTTTGGgtgtgttatttgtttgttttttttgttctgtagtATTGTCTTTGGAATTTGTATGAGTGAAAGCCAGTTCCTATCTTATCACTGATAAAGGCTTGTAAGAGCCATTTGTACATCAGATTCCCATTCTGATAGTATCCACTCTTGAAAAGCATTCATTAGATTAGACAGAGAGTTTTCCTACACTGCACAAAGCCTGGACCGCATACAAGCGAATCACTTGTTCCACGCTGCAAGTCGATACCGAATTCAAAGCATCCATCATTTCAGTTCATGATTCACCACATTGTGCGGAATGTAGTCACATGTCTGAGCAGCAGTCTTGAATACGAGTCTGTGCCTGCATGAGAACTTTAACTGGAGGCGTTCTCTCTACTTGGACTGGTGGTGTCAGTCAGGAATGGCAGCACGCTGACCTTTACATGTCTCACTGAACACTTCACTTCACAAGATCACCGGAGTATTATTTTATCTCTCACACTCGCTTTCTCTGTCTCGCTTTCTCTCTATGAAGGTCATATTTTAGAACTGGGCTTAATGTTGCTACTCTGCTGCGCAGTCAGAGATGCTGAAATGAAAGTCAAACCGGACACAATGCTTCAGAATGAAAAGCCATATAGCTAGTTGTACGTCAGTATGTCGAGGAAATGTACAGTTTTTGCCATCATGCCATCTATGTAAACTAAGCCCGGCTTGTTAAACACCAGCTTATTTAGCAGGAAACAGCTGTATGAAGGTTTCACAACAGGTTTTCTAAACTCCGTTTCATTGAAATCAGGATCCTCatactttttgctttttgttgtttgttgttgctTCAAGTAAAAATGTGCCAAAAGTGCTTATGTATGATAGAATTCTACCTTTTTCTTGAtgtttcaggttttttttattattaaaagtctTGACAGTGAAAAA

Function

NR:

description
PREDICTED: cell wall protein DAN4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41204 False 2668 lncRNA 0.38 5 65032607 65045678
XM_007259499.3 True 4103 mRNA 0.43 5 65022419 65046978

Neighbor

gene id symbol gene type direction distance location
LOC103034427 NA coding upstream 87951 64926535 ~ 64934468 (+)
LOC103035066 NA coding upstream 131766 64880938 ~ 64890653 (+)
LOC103035382 LOC108415267 coding upstream 145704 64869851 ~ 64876715 (+)
LOC103036008 LOC103036008,LOC108415307 coding upstream 154006 64859330 ~ 64868413 (+)
LOC103041527 LOC103041527 coding upstream 165594 64848648 ~ 64856825 (+)
mmachc mmachc coding downstream 14846 65061824 ~ 65067398 (+)
trnad-guc_4 NA coding downstream 26623 65073601 ~ 65073672 (+)
trnad-guc_5 NA coding downstream 27593 65074571 ~ 65074642 (+)
trnad-guc_6 NA coding downstream 28138 65075116 ~ 65075187 (+)
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding downstream 60532 65107510 ~ 65146627 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding upstream 35113 64984478 ~ 64987306 (+)
LOC111190945 NA non-coding upstream 40018 64964312 ~ 64982401 (+)
G30683 NA non-coding upstream 112965 64892398 ~ 64909454 (+)
G30646 NA non-coding upstream 189582 64720955 ~ 64832837 (+)
G30643 NA non-coding upstream 198270 64811379 ~ 64824149 (+)
G30718 NA non-coding downstream 3846 65050824 ~ 65159264 (+)
G30722 LOC108415433 non-coding downstream 10541 65057519 ~ 65059450 (+)
G30726 NA non-coding downstream 29494 65076472 ~ 65080951 (+)
G30763 NA non-coding downstream 323430 65370408 ~ 65371798 (+)
G30767 NA non-coding downstream 356544 65403522 ~ 65441108 (+)
kit kit other upstream 752724 64231244 ~ 64269695 (+)
G30362 NA other upstream 1676726 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 2091286 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 2169131 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 3086336 61926080 ~ 61936083 (+)
LOC103031672 NA other downstream 30802 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 51524 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 52313 65099291 ~ 65099362 (+)
G31000 NA other downstream 781803 65828781 ~ 65837365 (+)
G31355 NA other downstream 2167327 67214305 ~ 67215186 (+)

Expression


Co-expression Network