G30710 (ipo13,LOC105910849,LOC107573327)


Basic Information

Item Value
gene id G30710
gene name ipo13,LOC105910849,LOC107573327
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64984478 ~ 64987306 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41224
ACGTTGTTAATGTTGATTCGGGGAATAAGGCCAATCAGGCCAGGAATGACATCTGAGTAGTTCACGTCTATCGTTTCTGCTATGGACTGAAAACCATAGAGTAGAGCCTCTGTGTGCTGCCAGGACGTTGGTTGTTCTGCATTGGTAAGCAGTCTGCCTAGCTTGTCATAAAGATTACTAAGCAGCTCTGCTCCGAGCATCTCATAGACATACATCAGCGTATCTGATATGTCCAccCTGTAAATCCTGAACTGCTCTTTCTCGTCAGAGGACCAGGAGGCGTACTCTTCATCAGTGGGGAACTGGGCTTTATGGAGCAGGACGTCCACCAGCTGGAAATACACGGGCCTGTACACTTGGAGATAGACAGCCTGTTTCTCTGCTTCAAAGGACATGATGTCATCCTGTAGTGTGTACCagaaagtgagagtgagggaGCTTGTGGTTTCGTTGACCGGGTAGTGTCCAGGGATTCCTGTGCAGAACATGATCATATTGACCAGTGCCAAAAAACTTTGCCAGTGCTCCACCTGCTCCAGCAGCG

Function

symbol description
ipo13 Predicted to enable small GTPase binding activity. Acts upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: importin-13 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41224 True 544 lncRNA 0.47 4 64984478 64987306

Neighbor

gene id symbol gene type direction distance location
LOC103034427 NA coding upstream 50010 64926535 ~ 64934468 (+)
LOC103035066 NA coding upstream 93825 64880938 ~ 64890653 (+)
LOC103035382 LOC108415267 coding upstream 107763 64869851 ~ 64876715 (+)
LOC103036008 LOC103036008,LOC108415307 coding upstream 116065 64859330 ~ 64868413 (+)
LOC103041527 LOC103041527 coding upstream 127653 64848648 ~ 64856825 (+)
mmachc mmachc coding downstream 74518 65061824 ~ 65067398 (+)
trnad-guc_4 NA coding downstream 86295 65073601 ~ 65073672 (+)
trnad-guc_5 NA coding downstream 87265 65074571 ~ 65074642 (+)
trnad-guc_6 NA coding downstream 87810 65075116 ~ 65075187 (+)
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding downstream 120204 65107510 ~ 65146627 (+)
LOC111190945 NA non-coding upstream 2077 64964312 ~ 64982401 (+)
G30683 NA non-coding upstream 75024 64892398 ~ 64909454 (+)
G30643 NA non-coding upstream 160329 64811379 ~ 64824149 (+)
G30664 NA non-coding upstream 192679 64789121 ~ 64791799 (+)
G30652 NA non-coding upstream 209500 64752233 ~ 64774978 (+)
G30718 NA non-coding downstream 63518 65050824 ~ 65159264 (+)
G30722 LOC108415433 non-coding downstream 70213 65057519 ~ 65059450 (+)
G30726 NA non-coding downstream 89166 65076472 ~ 65080951 (+)
G30763 NA non-coding downstream 383102 65370408 ~ 65371798 (+)
G30767 NA non-coding downstream 416216 65403522 ~ 65441108 (+)
kit kit other upstream 714783 64231244 ~ 64269695 (+)
G30362 NA other upstream 1638785 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 2053345 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 2131190 62821743 ~ 62853288 (+)
LOC103046322 clic5b,LOC108411995,LOC107678823,LOC107726746,LOC105897798,LOC103355727,LOC108258161,LOC107743284 other upstream 3048395 61926080 ~ 61936083 (+)
LOC103033886 LOC108257901,LOC105910874 other downstream 35113 65022419 ~ 65046978 (+)
LOC103031672 NA other downstream 90474 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 111196 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 111985 65099291 ~ 65099362 (+)
G31000 NA other downstream 841475 65828781 ~ 65837365 (+)

Expression


Co-expression Network