G30722 (LOC108415433)


Basic Information

Item Value
gene id G30722
gene name LOC108415433
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65057519 ~ 65059450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41241
TGTTTTTAAGCAGATCCACTTCTCTTCTAAGCTGTTCCACTTCTTCCCTGCGCAGCTTAGAGCTAAAACTTTCCTCCTGGTTGCCTAGCGACGTTGTCCTGTCAATGTGGCCTCTGAGGCTGCTCAATTCTCGTCCAACTTCTCTCTTCCATTGCTCTAGCCGCCTCTCTACCCCGGggtccttctctccctctcggtctctctcacgctctcgctctctctgcctctcccGGTCATCCAGTTTCTCCTCAAGCCTCCTCATCTCCTCTGGAA
>TU41242
TGTTTTTAAGCAGATCCACTTCTCTTCTAAGCTGTTCCACTTCTTCCCTGCGCAGCTTAGAGCTAAAACTTTCCTCCTGGTTGCCTAGCGACGTTGTCCTGTCAATGTGGCCTCTGAGGCTGCTCAATTCTCGTCCAACTTCTCTCTTCCATTGCTCTAGCCGCCTCTCTACCCCGGggtccttctctccctctcggtctctctcacgctctcgctctctctgcctctcccGGTCATCCAGTTTCTCCTCAAGCCTCCTCATCTCCTCTTGTAATGTTTGTATTTGTCTTTGCTGagcatttctttctctctctacagaCATCAAGCTCTTTGATAAAA

Function

NR:

description
PREDICTED: RNA-binding protein 25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41241 False 273 lncRNA 0.31 2 65057519 65057988
TU41242 True 339 lncRNA 0.49 3 65057519 65059450

Neighbor

gene id symbol gene type direction distance location
LOC103034427 NA coding upstream 123051 64926535 ~ 64934468 (+)
LOC103035066 NA coding upstream 166866 64880938 ~ 64890653 (+)
LOC103035382 LOC108415267 coding upstream 180804 64869851 ~ 64876715 (+)
LOC103036008 LOC103036008,LOC108415307 coding upstream 189106 64859330 ~ 64868413 (+)
LOC103041527 LOC103041527 coding upstream 200694 64848648 ~ 64856825 (+)
mmachc mmachc coding downstream 2374 65061824 ~ 65067398 (+)
trnad-guc_4 NA coding downstream 14151 65073601 ~ 65073672 (+)
trnad-guc_5 NA coding downstream 15121 65074571 ~ 65074642 (+)
trnad-guc_6 NA coding downstream 15666 65075116 ~ 65075187 (+)
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding downstream 48060 65107510 ~ 65146627 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding upstream 70213 64984478 ~ 64987306 (+)
LOC111190945 NA non-coding upstream 75118 64964312 ~ 64982401 (+)
G30683 NA non-coding upstream 148065 64892398 ~ 64909454 (+)
G30643 NA non-coding upstream 233370 64811379 ~ 64824149 (+)
G30664 NA non-coding upstream 265720 64789121 ~ 64791799 (+)
G30726 NA non-coding downstream 17022 65076472 ~ 65080951 (+)
G30763 NA non-coding downstream 310958 65370408 ~ 65371798 (+)
G30767 NA non-coding downstream 344072 65403522 ~ 65441108 (+)
G30771 NA non-coding downstream 370784 65430234 ~ 65432399 (+)
G30772 NA non-coding downstream 372009 65431459 ~ 65433073 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 10541 65022419 ~ 65046978 (+)
kit kit other upstream 787824 64231244 ~ 64269695 (+)
G30362 NA other upstream 1711826 63335734 ~ 63345693 (+)
LOC103035278 NA other upstream 2126386 62926018 ~ 62931133 (+)
LOC103045797 NA other upstream 2204231 62821743 ~ 62853288 (+)
LOC103031672 NA other downstream 18330 65077780 ~ 65086780 (+)
trnad-guc_9 NA other downstream 39052 65098502 ~ 65098573 (+)
trnad-guc_10 NA other downstream 39841 65099291 ~ 65099362 (+)
G31000 NA other downstream 769331 65828781 ~ 65837365 (+)
G31355 NA other downstream 2154855 67214305 ~ 67215186 (+)

Expression


Co-expression Network