G30772


Basic Information

Item Value
gene id G30772
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65431459 ~ 65433073 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41306
ttatatatatatatacagtgccctccataattattggcacccctggttaagatgtgttctttagcttctcataaattgagttttgttcaaaataatataggaccacgatggaaaaaaagagtaaaatacaacctttaactcaagtgaatttattcagtaggaaaaaaatcccacattaagaaataattatttaacatcaaatcatgtgtgccacaattattagcacccctgatgttaatactttgtacaacccctttgccaacaaaacagcacctaatcttctcctgtaatgtttcacaagatgggagaatacagaaagagggatctttgaccattcctctttgcacattctctctaaatcatccaacgacctgggtcctctcctctgcactctcctcttcagctcaccccacaggttttcaatggggttgaggtctggggactgagatggccatgggaggagcttgattctgtgtgcggtgaaccatttctgtgtagatttggccacatgtttagggtcattatcttgctgaaagacccagtgacgacccatcttcagctttcgggcagaagccaccag
>TU41307
ttatatatatatatacagtgccctccataattattggcacccctggttaagatgtgttctttagcttctcataaattgagttttgttcaaaataatataggaccacgatggaaaaaaagagtaaaatacaacctttaactcaagtgaatttattcagtaggaaaaaaatcccacattaagaaataattatttaacatcaaatcatgtgtgccacaattattagcacccctgatgttaatactttgtacaacccccttttgccaacaaaacagcacctaatcttctcctgtaatgtttcacaagatgggagaatacagaaagagggatctttgaccattcctctttgcacattctctctaaatcatccaacgacctgggtcctctcctctgcactctcctcttcagctcaccccacaggttttcaatggggttgaggtctggggactgagatggccatgggaggagcttgattctgtgtgcggtgaaccatttctgtgtagatttggccacatgtttagggtcattatcttgctgaaagacccagtgacgacccatcttcagctttcgggcagaagccaccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41306 False 580 lncRNA 0.35 2 65431459 65433073
TU41307 True 582 lncRNA 0.45 2 65431459 65433073

Neighbor

gene id symbol gene type direction distance location
LOC103029237 LOC103029237,LOC108414737,LOC107658161,LOC107597864,LOC107669143,LOC107721808 coding upstream 182149 65246531 ~ 65249310 (+)
echdc2 echdc2 coding upstream 206959 65212693 ~ 65224500 (+)
LOC103031359 NA coding upstream 219954 65183357 ~ 65211505 (+)
LOC103041220 LOC108414547,LOC108258072,LOC107597850,LOC107721804,LOC107581484,LOC107658162,LOC107712838 coding upstream 284832 65107510 ~ 65146627 (+)
trnad-guc_6 NA coding upstream 356272 65075116 ~ 65075187 (+)
fam20b fam20b,LOC107669149,LOC107712860,LOC107658171 coding downstream 23664 65456737 ~ 65490821 (+)
LOC111191945 NA coding downstream 416054 65849127 ~ 65849762 (+)
plpp6 plpp6,LOC107683852,LOC107581521,LOC107669136,LOC107712867,LOC107739850,LOC107597802 coding downstream 421861 65854934 ~ 65862128 (+)
LOC103025553 NA coding downstream 436275 65869348 ~ 65886738 (+)
LOC103024186 LOC108415675 coding downstream 457857 65890930 ~ 65902416 (+)
G30763 NA non-coding upstream 59661 65370408 ~ 65371798 (+)
G30718 NA non-coding upstream 272195 65050824 ~ 65159264 (+)
G30726 NA non-coding upstream 350508 65076472 ~ 65080951 (+)
G30722 LOC108415433 non-coding upstream 372009 65057519 ~ 65059450 (+)
G30710 ipo13,LOC105910849,LOC107573327 non-coding upstream 444153 64984478 ~ 64987306 (+)
G30774 NA non-coding downstream 13281 65446354 ~ 65446930 (+)
G30775 NA non-coding downstream 34400 65467473 ~ 65468744 (+)
G30779 NA non-coding downstream 62448 65495521 ~ 65496339 (+)
G30780 NA non-coding downstream 64021 65497094 ~ 65500395 (+)
G30959 NA non-coding downstream 130581 65563654 ~ 65563914 (+)
trnad-guc_10 NA other upstream 332097 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 332886 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 344679 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 384481 65022419 ~ 65046978 (+)
kit kit other upstream 1161764 64231244 ~ 64269695 (+)
G31000 NA other downstream 395708 65828781 ~ 65837365 (+)
G31355 NA other downstream 1781232 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 2050262 67483335 ~ 67506898 (+)
G31407 NA other downstream 2064130 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 2258368 67691441 ~ 67844634 (+)

Expression


Co-expression Network