G30780


Basic Information

Item Value
gene id G30780
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65497094 ~ 65500395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41320
aaagactgagagtgtgGAGACAGAGCGTgtaaagactgagagtgtgGAGACAGAGCGTGTAAAGACTGAGAGTATGGAGACAGAGCGTGTAAAGACTGAGTgtaaagactgagagtgtgGAGACAGAGCGTGTAAAGACTGAGAGTGTAAAGACAGAGAGTGTGGAGACAGAGCGTGTAAAGACTGAGTCTAAAGACTGAGAGTGTGGAGACAGAGCGTgtaaagactgagagtgtgGAGACAGAGCGTGTAAAGACTGAGAGTATGGAGACAGAGCGTGTAAAGACTGAGTgtaaagactgagagtgtgGAGACAGAGCGTGTAAAGACTGAGTgtaaagactgagagtgtgGAGACAGAGCGTgtaaagactgagagtgtgGAGACAGAGCGTGTAAAGACTGAGTCTAAAGACTGAGAGTGTGGAGACTGAGAGTGTGTAAAGACTGAGAGTGTGGAGACTGAGAGTGTgtaaagactgagagtgtgGAGAC

Function

NR:

description
PREDICTED: homeodomain-interacting protein kinase 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41320 True 495 lncRNA 0.38 2 65497094 65500395

Neighbor

gene id symbol gene type direction distance location
fam20b fam20b,LOC107669149,LOC107712860,LOC107658171 coding upstream 6273 65456737 ~ 65490821 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857,LOC107658172 coding upstream 42786 65247335 ~ 65454308 (+)
LOC103029237 LOC103029237,LOC108414737,LOC107658161,LOC107597864,LOC107669143,LOC107721808 coding upstream 247784 65246531 ~ 65249310 (+)
echdc2 echdc2 coding upstream 272594 65212693 ~ 65224500 (+)
LOC103031359 NA coding upstream 285589 65183357 ~ 65211505 (+)
LOC111191945 NA coding downstream 348732 65849127 ~ 65849762 (+)
plpp6 plpp6,LOC107683852,LOC107581521,LOC107669136,LOC107712867,LOC107739850,LOC107597802 coding downstream 354539 65854934 ~ 65862128 (+)
LOC103025553 NA coding downstream 368953 65869348 ~ 65886738 (+)
LOC103024186 LOC108415675 coding downstream 390535 65890930 ~ 65902416 (+)
prrc2c prrc2c,LOC107597798,LOC107581475 coding downstream 407913 65908308 ~ 65931231 (+)
G30779 NA non-coding upstream 755 65495521 ~ 65496339 (+)
G30775 NA non-coding upstream 28350 65467473 ~ 65468744 (+)
G30774 NA non-coding upstream 50164 65446354 ~ 65446930 (+)
G30767 NA non-coding upstream 55986 65403522 ~ 65441108 (+)
G30959 NA non-coding downstream 63259 65563654 ~ 65563914 (+)
G30968 NA non-coding downstream 95992 65596387 ~ 65597484 (+)
G30986 NA non-coding downstream 177125 65677520 ~ 65682673 (+)
G30995 NA non-coding downstream 215172 65715567 ~ 65715777 (+)
G31004 NA non-coding downstream 234085 65734480 ~ 65734709 (+)
trnad-guc_10 NA other upstream 397732 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 398521 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 410314 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 450116 65022419 ~ 65046978 (+)
kit kit other upstream 1227399 64231244 ~ 64269695 (+)
G31000 NA other downstream 328386 65828781 ~ 65837365 (+)
G31355 NA other downstream 1713910 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 1982940 67483335 ~ 67506898 (+)
G31407 NA other downstream 1996808 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 2191046 67691441 ~ 67844634 (+)

Expression


Co-expression Network