G30799 (LOC108415209,LOC108257759,LOC107721365,LOC107555752,LOC107683924,LOC107556158)


Basic Information

Item Value
gene id G30799
gene name LOC108415209,LOC108257759,LOC107721365,LOC107555752,LOC107683924,LOC107556158
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 64722507 ~ 64736326 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41347
tttttttaataaaatGCACTGAATTTATTCACAAGCTTCCATCAACAATAAATGACAGCTGTGAGTACAGGTGAGCAATGGAAAGATTAAAACATCTGGAATGGAATTGAGTTTGAAGAGCAATGATGTTGGTTTAAATGCTGCACTGCTGAAGCTTCTTGTCAGCCTGCTTTAGGGAGGTCCAGGTGTTCAGCATGGAGGCTCGCAGTTTGGCCCAGATCAGGTGGTCCGTGAGGCCGAGGATTTGAGCAGCATGCTGGGCAGCAGCATCGGGAGACAGAACTGTGGAGCACCCGAGACCTGGAGGGACACTAGGCATACGAAGAGATGACCAGACATCCTGTGCACCCCAGTCAGGGGTAACAGGGGGGCAGTTAATGACAGGATAAGCTGTGTTTCCTGACATCACTGGACCCAAACCATTACTCCTTCCAGCAACAGCTACAAAAATTGTGGGAACTCCATCACCTTCATATTCAGCTTTGATACGCAGAGTCTCGTCGGGGCCTTTGTGCGCAGAAGTGACTCTAAGGTGACAGGGGATTCCGTATGAGCTGCAGGCTTTGCGGATTCTCTCACAGTGAGCCATGTCAGAAGTCGAGCCCATCAGCACTACAACCCTTCCACTTGATTGTGGTTCCAGAAGCAGCTGTACTCGCTCAGACACCCATTCAAAGTTCCTCTTCACCATCTGCATAGCTTCAGGAGTGACCTCTTTTAGGTCCCTGTAAACCTGTTTGTCTTTCTGTTGGCTGCGATCTCCAGCAGGCCACAGCCTCCACGAGTCATTGTCAATCACGTCAGCCAGAACAACCTCCTTGGTGGCCACATTGATGCCAAACTCAATCTTCATATCCACAAGGGTGCAGTTCTGGGTTGCCCAGGCCTTCTCCAGTATTTCAAAGATAGCAACTGTGCTCTTGCTCATGATGTCCACCTCACAGCGACCAATGGACACACCTGCCAAGTCAAAGCTAGCTGCCAGCAGCTGCTCCTCTGACCACTGTGGGTCATTGTTAGCATCATCCTGTGAGAGTTTGGgattaaaaacaaatcaataaataaataaatacaaaatctaTACCTTCATATAAACAGCTCTAGCTTAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108415209 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41347 True 1109 lncRNA 0.40 7 64722507 64736326

Neighbor

gene id symbol gene type direction distance location
ppat ppat,LOC107737308,LOC107683925,LOC107556156,LOC107721366,LOC107665312 coding downstream 3475 64702500 ~ 64719032 (-)
aasdh NA coding downstream 27593 64673515 ~ 64694914 (-)
cep135 cep135 coding downstream 96113 64606371 ~ 64626394 (-)
nmu nmu coding downstream 195839 64506959 ~ 64526668 (-)
clock clock,clocka coding downstream 221831 64427104 ~ 64500676 (-)
LOC103037239 NA coding upstream 15906 64752232 ~ 64762149 (-)
LOC103035690 NA coding upstream 103819 64840145 ~ 64848224 (-)
hook1 hook1,LOC107665311 coding upstream 156058 64892384 ~ 64915969 (-)
pfas pfas,LOC107593806,LOC107737373,LOC107556148,LOC107665308,LOC107737297 coding upstream 198739 64935065 ~ 64956229 (-)
ipo13 ipo13,LOC107697216,LOC107593276,LOC107691006,LOC107745904 coding upstream 224755 64961081 ~ 65019235 (-)
G30598 exoc1 non-coding downstream 131752 64587453 ~ 64590755 (-)
G30608 LOC107721360,LOC107665383,LOC107683916,LOC107556159 non-coding downstream 139812 64580374 ~ 64582695 (-)
LOC111191943 NA non-coding downstream 151227 64567576 ~ 64571280 (-)
G30597 NA non-coding downstream 194467 64527785 ~ 64528040 (-)
G30581 NA non-coding downstream 256916 64464239 ~ 64465591 (-)
G30817 NA non-coding upstream 34375 64770701 ~ 64774213 (-)
G30830 NA non-coding upstream 75060 64811386 ~ 64824124 (-)
G30831 NA non-coding upstream 75941 64812267 ~ 64819225 (-)
G30823 NA non-coding upstream 76734 64813060 ~ 64820112 (-)
G30855 NA non-coding upstream 139512 64875838 ~ 64876670 (-)
scfd2 scfd2 other downstream 958834 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 1237486 63433792 ~ 63485021 (-)
G30376 NA other downstream 1387661 63330044 ~ 63334846 (-)
fryl fryl,LOC107683942,LOC107665346 other downstream 1434399 63136951 ~ 63288108 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 2831778 61831841 ~ 61890729 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 38358 64774684 ~ 64799176 (-)
trnad-guc_7 NA other upstream 356752 65093078 ~ 65093149 (-)
trnad-guc_8 NA other upstream 361276 65097602 ~ 65097673 (-)
LOC103031958 myo6 other upstream 2126139 66862465 ~ 67044318 (-)
G31424 NA other upstream 2687546 67423872 ~ 67432424 (-)

Expression


Co-expression Network