G30990


Basic Information

Item Value
gene id G30990
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65677510 ~ 65681603 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41607
tgtccaaacttttgacccgtggctccattacacacagtactggggggccggggtgtccaaacttttgacccgtggctccattacacacagtactggggggccggggtgtccaaacttttgacccgtggctccattacacacagtactggagttcTAGCTACCTGTCCTTCGATCTAGCTGCCGTCCTCCGATTGGCCCCATTCATTCCAATGGGGCCACTTCGTACGACATTCGTACGAAATCCGTACGTCGTAACTTTTCGTAACGCATATTTTCGGAAAGagctcaataagttctacaggtCCTCAATTGGTTTCATcttagtatttcaaaaattGCGACGTCCACGGGCGTGCAAAGTTctgcccattcattttcaatgggcaaaaaaacgcgtacttacgaagtttttacgaaaaacgtaagtccgatcggaaagctgtatacaagcccaCCATTCCCGATATGGACGCacgttttctcttttgaacGAAGTCGATATTTCGAAAACTGCGGCACTAGTTAACCGgacaaaaaacaggtggaataataataataataataataataataataataataataataat

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko00950 Isoquinoline alkaloid biosynthesis
ko00965 Betalain biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU41607 True 590 lncRNA 0.44 2 65677510 65681603

Neighbor

gene id symbol gene type direction distance location
jun jun coding downstream 68736 65606592 ~ 65608774 (-)
LOC103027150 LOC108415562 coding downstream 75971 65598312 ~ 65601539 (-)
LOC103027761 NA coding downstream 80051 65592679 ~ 65597459 (-)
LOC103027441 NA coding downstream 90941 65582983 ~ 65586569 (-)
LOC103029766 angptl1,LOC107658173,LOC107739855,LOC107669140,LOC107712858 coding downstream 259029 65370370 ~ 65418481 (-)
LOC103026271 prdx6,LOC107712864 coding upstream 157277 65838880 ~ 65847180 (-)
myoc myoc coding upstream 249720 65931323 ~ 65941098 (-)
vamp4 vamp4 coding upstream 266031 65947634 ~ 65965285 (-)
itpa itpa coding upstream 304922 65986525 ~ 65989450 (-)
nt5e nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 coding upstream 710034 66391637 ~ 66430046 (-)
G30980 NA non-coding downstream 85456 65591823 ~ 65592054 (-)
G30942 fam20b,LOC107597857,LOC107712860,LOC107658171,LOC107669149 non-coding downstream 202845 65473137 ~ 65474665 (-)
G30919 NA non-coding downstream 223250 65281419 ~ 65454260 (-)
G30900 NA non-coding downstream 518226 65154118 ~ 65159284 (-)
G30869 NA non-coding downstream 654558 65022352 ~ 65022952 (-)
G31021 NA non-coding upstream 46876 65728479 ~ 65728703 (-)
G31029 NA non-coding upstream 151975 65833578 ~ 65835223 (-)
G31049 NA non-coding upstream 189461 65871064 ~ 65872082 (-)
G31051 NA non-coding upstream 193584 65875187 ~ 65875426 (-)
G31052 NA non-coding upstream 196493 65878096 ~ 65880707 (-)
trnad-guc_8 NA other downstream 579837 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 584361 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 878334 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 1913837 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2192489 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 1180862 66862465 ~ 67044318 (-)
G31424 NA other upstream 1742269 67423872 ~ 67432424 (-)
G31437 NA other upstream 1822146 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 2174003 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 2250957 67932560 ~ 67940713 (-)

Expression


Co-expression Network