G31052


Basic Information

Item Value
gene id G31052
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 65878096 ~ 65880707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41703
TTTCTCTGCTACTCTGCTGATCTCAACAGCGATGTCTACTCCAGAGTTGCCAATGCCAACCACCACCACTCGTTGTCCACGGAATGGATCAGGGTCCTTATATTCCCAACTGTGGATATATTTTCCTGGGAACGTGTCAATGCCTGTAgaagaaaaaattaattatcGACTGAGTTGTGAGAATACTGCCTGTGTGTGCAGTAATGGCGATGTGTGAACATACCTGGGAATGCTGAGAGGGGTGTGACAGGATGTGAGAAGTGCCCAGAACATATTAACACACCATCAAACACCTGCGTTTCTTTGTGACCATCTCTACTCTCAGTTACTACCTCCCACTGACCCGAGGAAGAGAAGTCATCCCGCTGTTTCACACTGAGCACCTTGGTCTGGAACACACGTACACAAACACCTACAGTGCCAagtaaaagtatgtaaacccaTTGGAATTTCatggttttctgcataaatatgtcTTAAATGATCAATTTGTCATTATTTTTATCCAAGTCAAGGGTATGGACAAATATAATGTGCACAAAACAATAACACAAAAGAAATTATGATAATAGTGACTTGGTTGTTTTCAACAATCAAACATCACAGTGCTAGTGGAAAAAGGCTGTGAGCTCATGTGTTAATGACCTCAAAAAGGTAATTGAAGTCAATTATTAGCATACCTGGAGCCTTGCTAGTTTGGAGGCGTGAACTAGCGCTAATTTGACTAATAAAAAAcgcttaccatatttttcacgctataaggagcaccagattttAATGCGCactatgtgacactagtaaggcacaggggtgtcgccatgtttcccttctaattcagcaggtgggatggggggtaactaagttaagagaagctaagctaagtaaagaaactgtaataaaaaaaaattatttaaaagtcaGACGAgcgttggatgttaatctacacagatttctctcctgggtgagtaaagtgcttctgtttatttacagtaaccttagatttcTAGATTTCCACAAAGGCTGGGTGgaagagcattagcattagcgggtAACCATTAGCGCTAGCCGcggttagtgctagtaaatacCTCCCGACAGTgctatactgaggaaccctaagtgttccaaTAAGCCAGGGTGATTTAATGCTcacagtccaataatactcacctctgaatggcaaaatagCTAGCAGTTTGCACATAATGCTAATATTGTTTCaatcttggtgctggagaactaaactgaaactcctgtataatgctgtacttcagcttcAGTCCTTACTGCTTGAGTGATAAAATTCATGCATAAGAcgcataaggcgcactgacattttctgggaaaattaaaggatgcATTAATTTGAGCCATTTCACACCAAAAAGAGCTTTCGGAGGATTTCTGATAAAAgatgtttaatttatataaagctGGAAAGGGTAACAAAGTGACTTCAAATACTTTAGAAAGTCACAAAGTCTACAGTAAGGCAAACAGTCTTCAAATAGAGAAAATTTGGGACTGTGGTTACTCTGCCAAGAAATGGGCACCCAGTCAAAATAACCTCAAAAGCATCATGAGTGAGGTAAATAAACAACCACAAGTGACAGACAGATTTGAAGGCATCATTGGTAAAGGCTAACATCTGTGTTGATGAGTCCATAAATCCTTAAACAAGCAGCAAAAGAGCACTCCAGAGACACTCCACAATGGTATTGGCAAAATAGTTTGTTGACAGATGAAACTAAGACTAAACTATTGCTGCACTTTATCAAGCATATGATAAAACATCATCCCAGGTGTAAAGTGGTGGAAAATCATCATGATTTGGGCAGACTTTGCTGCATCAGGGCCTGGACAGCTTACAATCAGTAAGGGGAAGATAAATTCCAGAATCTATAATGAGATAACGTAAGTGTCTGTATGTCTCATTAGAAGTtgggtgatgcaacaggacaatgacccaaagcaccaGAGCAAGTCCACGAAAAatgtctcaaaaaaaataaaatacacctaCTAGACCTGCCAAGTCAGTGCCCAGATTTCAGATATTATGAACTGACTTAAAGAGTTATGTAGAATTAAAGCAGCCAAGGAATATGAGCTAAAGCATTTCTGTCAGGAAGAAAGGCCTATAATTCCTACTAAAGGATGTGCAGGTCTAAATTAAAGCTACAGGAAGCACTAGGTTGATGTTATTGCTGCCAGAGGGAGGTCAATCAGCAACTGATTCCAAGGTTTTACTTACTAATAAAGTCCTATAAGGTCTTaatttttgtgttattatttgaGGCACGTTATATTTGTCAATACCCTTGACTgagatgaagatcagatcaTATTTTATGACAAAATTATGCAGAAAACCATGACATTACAAAGGACAGGGCATCAGTGCATATCAGGGTAGGTGGGTGATTACCTGGAGTTGAATGTGCTTGAGCAGGTTAAAGTGTTCTGCGTACAGTCTGAAGTACTGTAGCAACAGTGTGTGGGGCATGTAGTTTGGGTAGTGAGCTGGCATGGGGAAATCACTGAAACACATCATCTCTTTGGAGGTGTTCACAACCAGTGAACGGTAAATGCTGGCACACTCAGCCTCTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41703 True 2612 lncRNA 0.40 1 65878096 65880707

Neighbor

gene id symbol gene type direction distance location
LOC103026271 prdx6,LOC107712864 coding downstream 30916 65838880 ~ 65847180 (-)
jun jun coding downstream 269322 65606592 ~ 65608774 (-)
LOC103027150 LOC108415562 coding downstream 276557 65598312 ~ 65601539 (-)
LOC103027761 NA coding downstream 280637 65592679 ~ 65597459 (-)
LOC103027441 NA coding downstream 291527 65582983 ~ 65586569 (-)
myoc myoc coding upstream 50616 65931323 ~ 65941098 (-)
vamp4 vamp4 coding upstream 66927 65947634 ~ 65965285 (-)
itpa itpa coding upstream 105818 65986525 ~ 65989450 (-)
nt5e nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 coding upstream 510930 66391637 ~ 66430046 (-)
mei4 NA coding upstream 667283 66547990 ~ 66674798 (-)
G31051 NA non-coding downstream 2670 65875187 ~ 65875426 (-)
G31049 NA non-coding downstream 6014 65871064 ~ 65872082 (-)
G31029 NA non-coding downstream 42873 65833578 ~ 65835223 (-)
G31021 NA non-coding downstream 149393 65728479 ~ 65728703 (-)
G30990 NA non-coding downstream 196493 65677510 ~ 65681603 (-)
G31054 NA non-coding upstream 2560 65883267 ~ 65883613 (-)
G31053 NA non-coding upstream 4761 65885468 ~ 65886167 (-)
G31070 NA non-coding upstream 37685 65918392 ~ 65923367 (-)
G31073 prrc2c,LOC107697494 non-coding upstream 43524 65924231 ~ 65924697 (-)
G31102 NA non-coding upstream 124186 66004893 ~ 66005868 (-)
trnad-guc_8 NA other downstream 780423 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 784947 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 1078920 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 2114423 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2393075 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 981758 66862465 ~ 67044318 (-)
G31424 NA other upstream 1543165 67423872 ~ 67432424 (-)
G31437 NA other upstream 1623042 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 1974899 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 2051853 67932560 ~ 67940713 (-)

Expression


Co-expression Network