Gene
RNA
| Item | Value |
|---|---|
| gene id | G31073 |
| gene name | prrc2c,LOC107697494 |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035899.1 |
| NCBI id | CM008302.1 |
| chromosome length | 74127438 |
| location | 65924231 ~ 65924697 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| prrc2c | Predicted to be involved in cell differentiation. Orthologous to human PRRC2C (proline rich coiled-coil 2C). |
| description |
|---|
| PREDICTED: protein PRRC2C isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU41729 | True | 330 | lncRNA | 0.53 | 2 | 65924231 | 65924697 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103026271 | prdx6,LOC107712864 | coding | downstream | 77051 | 65838880 ~ 65847180 (-) |
| jun | jun | coding | downstream | 315457 | 65606592 ~ 65608774 (-) |
| LOC103027150 | LOC108415562 | coding | downstream | 322692 | 65598312 ~ 65601539 (-) |
| LOC103027761 | NA | coding | downstream | 326772 | 65592679 ~ 65597459 (-) |
| LOC103027441 | NA | coding | downstream | 337662 | 65582983 ~ 65586569 (-) |
| myoc | myoc | coding | upstream | 6626 | 65931323 ~ 65941098 (-) |
| vamp4 | vamp4 | coding | upstream | 22937 | 65947634 ~ 65965285 (-) |
| itpa | itpa | coding | upstream | 61828 | 65986525 ~ 65989450 (-) |
| nt5e | nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 | coding | upstream | 466940 | 66391637 ~ 66430046 (-) |
| mei4 | NA | coding | upstream | 623293 | 66547990 ~ 66674798 (-) |
| G31070 | NA | non-coding | downstream | 864 | 65918392 ~ 65923367 (-) |
| G31053 | NA | non-coding | downstream | 38064 | 65885468 ~ 65886167 (-) |
| G31054 | NA | non-coding | downstream | 40618 | 65883267 ~ 65883613 (-) |
| G31052 | NA | non-coding | downstream | 43524 | 65878096 ~ 65880707 (-) |
| G31051 | NA | non-coding | downstream | 48805 | 65875187 ~ 65875426 (-) |
| G31102 | NA | non-coding | upstream | 80196 | 66004893 ~ 66005868 (-) |
| G31108 | NA | non-coding | upstream | 99518 | 66024215 ~ 66069347 (-) |
| G31109 | NA | non-coding | upstream | 101353 | 66026050 ~ 66038372 (-) |
| G31118 | NA | non-coding | upstream | 148636 | 66073333 ~ 66076356 (-) |
| G31120 | NA | non-coding | upstream | 155247 | 66079944 ~ 66080258 (-) |
| trnad-guc_8 | NA | other | downstream | 826558 | 65097602 ~ 65097673 (-) |
| trnad-guc_7 | NA | other | downstream | 831082 | 65093078 ~ 65093149 (-) |
| LOC103036530 | cyp2p7,cyp2j20,LOC108415355 | other | downstream | 1125055 | 64774684 ~ 64799176 (-) |
| scfd2 | scfd2 | other | downstream | 2160558 | 63528281 ~ 63763673 (-) |
| usp46 | usp46 | other | downstream | 2439210 | 63433792 ~ 63485021 (-) |
| LOC103031958 | myo6 | other | upstream | 937768 | 66862465 ~ 67044318 (-) |
| G31424 | NA | other | upstream | 1499175 | 67423872 ~ 67432424 (-) |
| G31437 | NA | other | upstream | 1579052 | 67503749 ~ 67528337 (-) |
| arpc5 | arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 | other | upstream | 1930909 | 67855606 ~ 67885433 (-) |
| LOC103046133 | LOC108439589 | other | upstream | 2007863 | 67932560 ~ 67940713 (-) |
