G31108


Basic Information

Item Value
gene id G31108
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 66024215 ~ 66069347 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41780
gggggggtgccctttcttcaggttagagcaactgcccttcaagattcctgtgcacGCCCCTGttaacaggtaatgctaatactgctgcagcaGTGGTAGAgcgggttagcagcaggctacagggcaggccgatatactcacctccgaATGGTGAAAGAGATaccgcttagcgtggttagcagctaatgctaatacttcttcagttttggtgctggagaactaaattgaAACTACTGTATAACTGTGTACTTCAGGAgattggctttactgctctttacaacctgactgttgaaattcttaaataaGGGGCATGGGTATATAAGTTGAAATGATGATTTTTAGGATAATTAACGGATTTTCAACATATtaaaagttttacacactgattttttttcaagCCTGGAAACAAGCTTGAAGCTTTCCCTGTAGATTTTGCGGTATATTCTGGATAACTGTGGTAGAAGCCACAGTTTATTTAGTGGAATCCATGTATACATCTGCCTGTACCATGTTTTATGTTCCTGGCTGAAGTTTTGTAGATCATTTACAAGACAAATACTGcaactaaaacacaaaactaaaaacattacaGGATTAGATGCATTCTTTTCCCTAGCTAATATGAAAAACAGAAGTTTGTAATAATGTTGATTTGATAATTCATGCCATCTCTATGTAGTGCTTTCAGCCCTAAACTCCTTTTATAAACATTTGCCAAGACGTTTGCTAATCagagcagagtttttttttctcctgtgtgaccCCAATGTGTGATCTTCTGCCACAGCacatgttttttacagtaagcagGCCTATGTAAAAGTTCTTACAAAGGCAGAACAGCCGTTGTAAGTAGTTACGTTATCCACAAGAGAGCAGTCTTCCCTAAACTCCTTTTGTTGGGCTGCCTAAAGATGATAATGGTGAATAGAGGCTGGTGGGGGCACTCCAGTGACTTTTTGCTGTTAAGATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41780 True 974 lncRNA 0.37 2 66024215 66069347

Neighbor

gene id symbol gene type direction distance location
itpa itpa coding downstream 34765 65986525 ~ 65989450 (-)
vamp4 vamp4 coding downstream 58930 65947634 ~ 65965285 (-)
myoc myoc coding downstream 83117 65931323 ~ 65941098 (-)
LOC103026271 prdx6,LOC107712864 coding downstream 177035 65838880 ~ 65847180 (-)
jun jun coding downstream 415441 65606592 ~ 65608774 (-)
nt5e nt5e,LOC107562347,LOC107660511,LOC107680304,LOC107554926 coding upstream 322290 66391637 ~ 66430046 (-)
mei4 NA coding upstream 478643 66547990 ~ 66674798 (-)
senp6 senp6 coding upstream 984318 67053665 ~ 67079442 (-)
LOC103025634 NA coding upstream 1017087 67086434 ~ 67088151 (-)
LOC103026240 LOC103026240,LOC108427476,LOC105895132,LOC108274573 coding upstream 1058822 67128169 ~ 67151426 (-)
G31102 NA non-coding downstream 18347 66004893 ~ 66005868 (-)
G31073 prrc2c,LOC107697494 non-coding downstream 99518 65924231 ~ 65924697 (-)
G31070 NA non-coding downstream 100848 65918392 ~ 65923367 (-)
G31053 NA non-coding downstream 138048 65885468 ~ 65886167 (-)
G31054 NA non-coding downstream 140602 65883267 ~ 65883613 (-)
G31118 NA non-coding upstream 3986 66073333 ~ 66076356 (-)
G31120 NA non-coding upstream 10597 66079944 ~ 66080258 (-)
G31135 rngtt,LOC107660510,LOC107554925 non-coding upstream 164927 66234274 ~ 66273094 (-)
G31136 NA non-coding upstream 205842 66275189 ~ 66275591 (-)
LOC107197775 NA non-coding upstream 275783 66345130 ~ 66346623 (-)
trnad-guc_8 NA other downstream 926542 65097602 ~ 65097673 (-)
trnad-guc_7 NA other downstream 931066 65093078 ~ 65093149 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other downstream 1225039 64774684 ~ 64799176 (-)
scfd2 scfd2 other downstream 2260542 63528281 ~ 63763673 (-)
usp46 usp46 other downstream 2539194 63433792 ~ 63485021 (-)
LOC103031958 myo6 other upstream 793118 66862465 ~ 67044318 (-)
G31424 NA other upstream 1354525 67423872 ~ 67432424 (-)
G31437 NA other upstream 1434402 67503749 ~ 67528337 (-)
arpc5 arpc5,arpc5b,LOC103045524,LOC107599090,LOC107698380,LOC107732423,LOC104921830 other upstream 1786259 67855606 ~ 67885433 (-)
LOC103046133 LOC108439589 other upstream 1863213 67932560 ~ 67940713 (-)

Expression


Co-expression Network