G31149


Basic Information

Item Value
gene id G31149
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 66343334 ~ 66394105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU41836
agcatatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggccaagaATATCACATTCCCACGCTCCCAAATGATGAACTATTTTCTTCATATCGTCACAGGGTGAGTTGAGGGAACTTCAGCCCTGCCTTCATGTCATGGTCTCAATCAATGAAGCCCATCTGAGCGAAATAGACTGATCAGCTGAGTTGGGCACATTTTAAGGTCGCTGAGCAGGACTGTTTAACTTTTAAGACGGTAAAGAGCTATCATGCTCCAATAAGTTTGTTTTCAATGTGGTGGAGTGGAAcctggttaaataaagctaCAGTACGTGCGAGTTCACTGAATCCATGTGTTTGTGCCTCTCTCTGCCACATCCTGTCTGCCAGGCCAGTGGCCATGCCCTTATCCCCATGGGGCGAGCCACAACATCTTATCTAATGTCTTATCTATGTTGTATTATCTGTGAAAACACAAAGCCTGGATCAGTGTTGACATTACAGTATTCACACTATATGGGGGATATCTATACACTATATAAGGACATCCCTAGATTTCTAAGTACTCTAAGACTCTTTTTCcagtataaacaaaaataaataaatcccattacatttaaaatatcaaaCATGTATAATTTTAACATGAATAAGAAAGTTTCTAAAGCTGTGTGAGCTATGCTGTCTGTACTATTGCTTTCATATTTGGAAATCAAATCTTGCCCAATCATCATGTGTAATTATGACACTGTCTGATTATAGGTGGTGTCACAGTTAAGGTGCAGTGGTTACAGTAAGTGATTACATGTGGTGTCATAAAGTAATCACTGCATTACAATTATGTCTACAATGTGCCCATAATCATTTCTTCTACCTTCTTCTGTGTAAAAGTTTAACCTTTTACACAGAACTACAACGTTACTGAACTAAAATCATTGTTTCCCATATGTAACCTGTATTTATGCCAAACAGATAAAAAGATCTGTACAAAAGTCTAAATCAAACCTAGTGATTCTGTCTAAATTCCTCAGCACTATGAGGAGCCTAACAGCAGTTACTGCTGGCTATCTGTGCTCATTACATTATTAACAGTCTGGTATCAGAACtttaaactaattaaactaATCTCACTAGCTCACAGACAAGACCCAGAGCAGTGCGCACAGCATCAGGGCCATGACGGGACTCTGGAGCCTGATGGCAGAGTTAAAAGAGCTGTAAAAGCGGATGCGGCCCTCCACCGCTGGGtgaactctcttcctctctgttaTGTATCCAGCCACCACAGCTATATCCAGGTCACCTGCAAGCAGATCACACCATTACACATGAGGATGCACATCAAAATACTGttaataggtcattttactgaatgggtgccatttctctgcccaggaaattacatgtataaatgtgcacacaaaataactttaaaatacattttattactaagcacagtacattgacctaattgcaaaagtatgatatgtaattaaaaacattaataaaaactacttaaaacacttaaataaaatagcatttgttacctgtccccacctctaactataaactttaccatgaaatataattgcTAAAATcatttagagatttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41836 True 1622 lncRNA 0.35 2 66343334 66394105

Neighbor

gene id symbol gene type direction distance location
cnr1 cnr1,LOC104936193 coding upstream 1377 66336429 ~ 66341957 (+)
LOC103021656 rngtt,LOC107554925,LOC107731501,LOC107660510 coding upstream 69617 66096715 ~ 66273717 (+)
LOC103035811 dnm3,dnm3a,LOC107712872,LOC107581471 coding upstream 275298 66007256 ~ 66068036 (+)
mettl13 mettl13,LOC107712871,LOC107733805 coding upstream 336873 65989532 ~ 66006461 (+)
prrc2c prrc2c,LOC107597798,LOC107581475 coding upstream 412103 65908308 ~ 65931231 (+)
htr1b LOC108427470 coding downstream 287017 66681122 ~ 66684322 (+)
LOC103023947 impg1,LOC107660503 coding downstream 407486 66801591 ~ 66859895 (+)
LOC111191093 LOC103025937 coding downstream 701793 67095898 ~ 67096914 (+)
LOC111194387 NA coding downstream 703858 67097963 ~ 67100303 (+)
LOC103025937 LOC103025937 coding downstream 719091 67113196 ~ 67116181 (+)
G31123 NA non-coding upstream 67735 66275166 ~ 66275599 (+)
G31119 NA non-coding upstream 263076 66079904 ~ 66080258 (+)
G31091 NA non-coding upstream 277237 66065353 ~ 66066097 (+)
G31090 NA non-coding upstream 325083 66012182 ~ 66018251 (+)
G31012 NA non-coding upstream 471647 65871198 ~ 65871687 (+)
G31161 NA non-coding downstream 52056 66446161 ~ 66446404 (+)
G31181 NA non-coding downstream 59397 66453502 ~ 66454191 (+)
G31192 NA non-coding downstream 187697 66581802 ~ 66582566 (+)
G31234 NA non-coding downstream 427084 66821189 ~ 66959582 (+)
G31244 NA non-coding downstream 498324 66892429 ~ 66917769 (+)
G31000 NA other upstream 505969 65828781 ~ 65837365 (+)
trnad-guc_10 NA other upstream 1243972 65099291 ~ 65099362 (+)
trnad-guc_9 NA other upstream 1244761 65098502 ~ 65098573 (+)
LOC103031672 NA other upstream 1256554 65077780 ~ 65086780 (+)
LOC103033886 LOC108257901,LOC105910874 other upstream 1296356 65022419 ~ 65046978 (+)
G31355 NA other downstream 820200 67214305 ~ 67215186 (+)
LOC103027733 NA other downstream 1089230 67483335 ~ 67506898 (+)
G31407 NA other downstream 1103098 67497203 ~ 67497697 (+)
hmcn1 hmcn1,LOC107698379,LOC107732365,LOC106560561 other downstream 1297336 67691441 ~ 67844634 (+)
LOC103035359 erh,ERH,LOC107580641,LOC105904210,LOC106607637 other downstream 1625935 68020040 ~ 68022940 (+)

Expression


Co-expression Network